Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq35245 120 2e-22
seq8335 113 3e-20
seq20113 104 2e-17
seq2224 104 2e-17
seq1514 95.1 9e-15
>seq35245
Length=420
Score = 120 bits (132), Expect = 2e-22
Identities = 157/215 (73%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| |||||| ||||||||||| |||| || ||| | || ||
Sbjct 129 CACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 188
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || | ||| ||||| || || | || | || ||||| |||
Sbjct 189 AAGCTGCTTGCCAGCNA---TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTG 245
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | |||||||||| || |||||||| | || || |||
Sbjct 246 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 303
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
|| |||||||||||||| |||||||| ||||||||
Sbjct 304 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 338
>seq8335
Length=118861
Score = 113 bits (124), Expect = 3e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| || | || ||| |||| || |||||||| || || ||
Sbjct 14926 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 14867
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||| ||||| ||||| | ||| | || ||||| || ||||| ||||| |
Sbjct 14866 AATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTCACATT 14807
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||||| ||||| || |||| || || ||||| || ||||| ||||| ||
Sbjct 14806 GTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGAC 14747
Query 44326 GAAGATTTGCAT 44337
||||||||||||
Sbjct 14746 GAAGATTTGCAT 14735
>seq20113
Length=64481
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| || | || ||| | || || |||||||| || || ||
Sbjct 11375 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 11316
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||| ||||| || || | ||| | ||| ||||| || ||||| ||| | |
Sbjct 11315 AATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTGGACTTGACGTT 11256
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||||| ||||| || |||| || || ||||| || ||||| ||||| ||
Sbjct 11255 GTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGAC 11196
Query 44326 GAAGATTTGCAT 44337
||||||||||||
Sbjct 11195 GAAGATTTGCAT 11184
>seq2224
Length=467227
Score = 104 bits (114), Expect = 2e-17
Identities = 134/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| | ||| | || || |||||||| ||||| || |
Sbjct 112109 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 112050
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| ||||| || || | || | || ||||| ||| |||||| ||| || |||
Sbjct 112049 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 111990
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||||| ||| |||||||| | || || ||||| ||||| |||||||| ||
Sbjct 111989 --CGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 111932
Query 44326 GAA 44328
|||
Sbjct 111931 GAA 111929
Score = 100 bits (110), Expect = 2e-16
Identities = 129/176 (73%), Gaps = 4/176 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| || ||| | || || |||||||| ||||| || |
Sbjct 102760 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 102701
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| ||||| || || | || | || ||||| ||| |||||| ||| || |||
Sbjct 102700 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 102641
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCT 44321
| |||||||||| ||| |||||||| | || || ||||| ||||| |||||||
Sbjct 102640 --CAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCT 102587
>seq1514
Length=10590
Score = 95.1 bits (104), Expect = 9e-15
Identities = 125/171 (73%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| |||| || ||| | || || |||||||| ||||| ||
Sbjct 5775 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 5716
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||||| ||||| || || | ||| | || ||||| ||| |||||| ||| || ||
Sbjct 5715 GATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-AACGT 5657
Query 44266 T-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315
| | |||||||| | ||| || ||||| | || || ||||| || ||||
Sbjct 5656 TGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGA 5606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359822003465694
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |