Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq20113 134 3e-26 seq35245 127 5e-24 seq2224 127 5e-24 seq8335 125 2e-23 seq1514 125 2e-23 >seq20113 Length=64481 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || ||||| |||||||| || || ||| Sbjct 10959 CAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCCGAC 11018 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || ||||| ||||| || Sbjct 11019 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAG 11078 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || ||||| | ||||| |||| || ||| | Sbjct 11079 CGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAACATT 11138 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 11139 CAGAAGGAGTCGACTCTTCACCTCGTT 11165 >seq35245 Length=420 Score = 127 bits (140), Expect = 5e-24 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 332 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 273 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || ||||| || Sbjct 272 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAG 213 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || | | || || || ||||| || ||||| | |||||| |||| || ||| || Sbjct 212 CGCCTGA---TNGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACATC 156 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 155 CAGAAGGAGTCCACTCTGCACCTCGT 130 >seq2224 Length=467227 Score = 127 bits (140), Expect = 5e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || |||||||| |||||||| ||| |||||||| Sbjct 111928 TTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCAT 111987 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| || ||||| || || || Sbjct 111988 CGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGCCT 112047 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || |||||||| || ||||| || ||||| | ||| | |||| || ||| |||| || Sbjct 112048 GATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGAA 112107 >seq8335 Length=118861 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || ||||| || |||||||| || ||| Sbjct 14510 CAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCCGAC 14569 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || || || ||||| ||||| || Sbjct 14570 ACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAG 14629 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||||| || ||||| | ||| | |||| || ||| | Sbjct 14630 CGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAACATT 14689 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 14690 CAGAAGGAGTCCACTCTTCACCTCGTT 14716 >seq1514 Length=10590 Score = 125 bits (138), Expect = 2e-23 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || ||| ||||||||||| ||||| || Sbjct 5606 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGT 5665 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || |||||||| ||||| || || || ||||||||||| | Sbjct 5666 CGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAACAGCGCCTGATCTTCGCCGGCA 5725 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATC 178114 | ||||| || ||||| | || || |||| || ||| |||| || || || Sbjct 5726 AGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTC 5777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203139241860108