Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq35245 149 6e-31 seq8335 143 2e-29 seq20113 134 1e-26 seq2224 132 4e-26 seq1514 114 1e-20 seq31326 96.9 3e-15 seq31299 91.5 1e-13 seq3335 91.5 1e-13 >seq35245 Length=420 Score = 149 bits (164), Expect = 6e-31 Identities = 174/233 (75%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || ||||| ||| ||||||||| ||||| |||||| Sbjct 109 CCACCACCACGCAGGCGGAGCACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCG 168 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| | || || ||||||||||| || ||||||||||||||||| | | Sbjct 169 GAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGC---NATCAGGCGCTGTTGGTCGGGG 225 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | |||||| ||||| Sbjct 226 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACT 283 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 284 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 336 >seq8335 Length=118861 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| || ||||||||| ||||| ||||| || Sbjct 14961 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 14902 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| |||||||||||||| || | ||| Sbjct 14901 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGA 14842 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || |||| || | | | |||||| || || || Sbjct 14841 ATGCCCTCCTTGTCTTGGATCTTGGACTTC-ACATTGTCGATCGTGTCGGATGATTCGAC 14783 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| || |||||||| ||||| || ||||| Sbjct 14782 TTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||||||| |||||||| Sbjct 14733 CCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 14674 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 14673 AAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGA 14614 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | ||| | | | |||||| |||||||| Sbjct 14613 ATACCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 14555 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| || || |||||||| Sbjct 14554 CTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507 >seq20113 Length=64481 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| || ||||||||| ||||| ||||| || Sbjct 11410 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 11351 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| ||||| ||||||||||||||||| | || Sbjct 11350 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 11291 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| ||| | | | |||||| || || || Sbjct 11290 ATACCCTCCTTGTCTTGGATCTTGGACTT-GACGTTGTCGATCGTGTCGGATGATTCGAC 11232 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| || || ||||| ||||| || ||||| Sbjct 11231 TTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| |||||||| || || || | || || |||||||| || || || Sbjct 11147 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 11088 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || |||||||||||||| | |||| | |||||||||| ||| | || | | ||| Sbjct 11087 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGACGT 11029 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||| ||||| | || || || || || ||||| ||||| | Sbjct 11028 TGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 10969 Query 41850 CGAAAATCTGCAT 41862 | || |||||||| Sbjct 10968 CAAAGATCTGCAT 10956 >seq2224 Length=467227 Score = 132 bits (146), Expect = 4e-26 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| | ||||| | || || ||||||||||||||||| | Sbjct 112109 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 112050 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||||||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 112049 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 111990 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||||||||| | || || || || |||||||| ||||| || Sbjct 111989 CG--ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 111932 Query 41851 GAAA 41854 |||| Sbjct 111931 GAAA 111928 Score = 129 bits (142), Expect = 5e-25 Identities = 135/175 (77%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| || ||||| | || |||||||||||||||||||| | Sbjct 102760 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 102701 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||||||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 102700 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-GACATTG 102642 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 | | |||||| ||||||||||| | || || || || |||||||| |||| Sbjct 102641 TCAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCT 102587 >seq1514 Length=10590 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||| |||||||| | || || ||||||||||||||||| Sbjct 5775 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 5716 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||||||||||||||||| | || | || |||||||||| ||| || Sbjct 5715 GATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 5668 >seq31326 Length=100 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 41681 ATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740 ||||| |||||||| || ||||| | || || ||||||||||| ||||| ||||||||| Sbjct 2 ATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGC 61 Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 |||||||| | ||| | || |||||||||| ||| || Sbjct 62 TGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 99 >seq31299 Length=100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 41681 ATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740 ||||| |||||||| || ||||| | || || ||||||||||| || || ||||||||| Sbjct 99 ATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGC 40 Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 |||||||| | ||| | || |||||||||| ||| || Sbjct 39 TGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 2 >seq3335 Length=453419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || || ||||||||| ||||||| |||||| |||||| || ||| Sbjct 234109 CGCATCGCCCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 234168 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 || || |||||||||||||| | |||| ||| | || |||||||||| ||| Sbjct 234169 ATTGATGCCGACTACCGCGGCCAGGTCAAGATCCTGCTGTTCAACCACGCCGA 234221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || || ||||||||| ||||||| |||||| |||||| || ||| Sbjct 249187 CGCATCGCCCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 249246 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 || || |||||||||||||| | |||| ||| | || |||||||||| ||| Sbjct 249247 ATTGATGCCGACTACCGCGGCCAGGTCAAGATCCTTCTGTTCAACCACGCCGA 249299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462082198098400