Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq35245 149 6e-31
seq8335 143 2e-29
seq20113 134 1e-26
seq2224 132 4e-26
seq1514 114 1e-20
seq31326 96.9 3e-15
seq31299 91.5 1e-13
seq3335 91.5 1e-13
>seq35245
Length=420
Score = 149 bits (164), Expect = 6e-31
Identities = 174/233 (75%), Gaps = 7/233 (3%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | ||| || ||||| ||| ||||||||| ||||| ||||||
Sbjct 109 CCACCACCACGCAGGCGGAGCACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCG 168
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| || ||||| | || || ||||||||||| || ||||||||||||||||| | |
Sbjct 169 GAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGC---NATCAGGCGCTGTTGGTCGGGG 225
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|| | || |||||||||| ||| || ||| || | || | |||||| |||||
Sbjct 226 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACT 283
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 284 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 336
>seq8335
Length=118861
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| |||||| || ||||||||| ||||| ||||| ||
Sbjct 14961 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 14902
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||| ||||| |||||||||||||| || | |||
Sbjct 14901 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGA 14842
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| || |||| || | | | |||||| || || ||
Sbjct 14841 ATGCCCTCCTTGTCTTGGATCTTGGACTTC-ACATTGTCGATCGTGTCGGATGATTCGAC 14783
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || ||||| || |||||||| ||||| || |||||
Sbjct 14782 TTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| ||||||||||||||| ||||||||
Sbjct 14733 CCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 14674
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || || |||||||| || ||||| || || ||||||||||| | |||
Sbjct 14673 AAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGA 14614
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || | | ||| | | | |||||| ||||||||
Sbjct 14613 ATACCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 14555
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||||||||| || || ||||||||
Sbjct 14554 CTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507
>seq20113
Length=64481
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| |||||| || ||||||||| ||||| ||||| ||
Sbjct 11410 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 11351
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| ||||| ||||||||||||||||| | ||
Sbjct 11350 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 11291
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| || ||| ||| | | | |||||| || || ||
Sbjct 11290 ATACCCTCCTTGTCTTGGATCTTGGACTT-GACGTTGTCGATCGTGTCGGATGATTCGAC 11232
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || ||||| || || ||||| ||||| || |||||
Sbjct 11231 TTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184
Score = 116 bits (128), Expect = 3e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||||||||| |||||||| || || || | || || |||||||| || || ||
Sbjct 11147 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 11088
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|| |||||||||||||| | |||| | |||||||||| ||| | || | | |||
Sbjct 11087 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGACGT 11029
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | | |||||| ||||| ||||| | || || || || || ||||| ||||| |
Sbjct 11028 TGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 10969
Query 41850 CGAAAATCTGCAT 41862
| || ||||||||
Sbjct 10968 CAAAGATCTGCAT 10956
>seq2224
Length=467227
Score = 132 bits (146), Expect = 4e-26
Identities = 141/184 (77%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| | ||||| | || || ||||||||||||||||| |
Sbjct 112109 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 112050
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||||||||||||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 112049 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 111990
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||||| ||||||||||| | || || || || |||||||| ||||| ||
Sbjct 111989 CG--ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 111932
Query 41851 GAAA 41854
||||
Sbjct 111931 GAAA 111928
Score = 129 bits (142), Expect = 5e-25
Identities = 135/175 (77%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| || ||||| | || |||||||||||||||||||| |
Sbjct 102760 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 102701
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
|||||||||||||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 102700 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-GACATTG 102642
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846
| | |||||| ||||||||||| | || || || || |||||||| ||||
Sbjct 102641 TCAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCT 102587
>seq1514
Length=10590
Score = 114 bits (126), Expect = 1e-20
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| |||||||| |||||||| | || || |||||||||||||||||
Sbjct 5775 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 5716
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
||||||||||||||||| | || | || |||||||||| ||| ||
Sbjct 5715 GATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 5668
>seq31326
Length=100
Score = 96.9 bits (106), Expect = 3e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 41681 ATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740
||||| |||||||| || ||||| | || || ||||||||||| ||||| |||||||||
Sbjct 2 ATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGC 61
Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|||||||| | ||| | || |||||||||| ||| ||
Sbjct 62 TGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 99
>seq31299
Length=100
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 41681 ATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740
||||| |||||||| || ||||| | || || ||||||||||| || || |||||||||
Sbjct 99 ATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGC 40
Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|||||||| | ||| | || |||||||||| ||| ||
Sbjct 39 TGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 2
>seq3335
Length=453419
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || || ||||||||| ||||||| |||||| |||||| || |||
Sbjct 234109 CGCATCGCCCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 234168
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|| || |||||||||||||| | |||| ||| | || |||||||||| |||
Sbjct 234169 ATTGATGCCGACTACCGCGGCCAGGTCAAGATCCTGCTGTTCAACCACGCCGA 234221
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || || ||||||||| ||||||| |||||| |||||| || |||
Sbjct 249187 CGCATCGCCCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 249246
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|| || |||||||||||||| | |||| ||| | || |||||||||| |||
Sbjct 249247 ATTGATGCCGACTACCGCGGCCAGGTCAAGATCCTTCTGTTCAACCACGCCGA 249299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462082198098400
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