Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xeromyces_20bisporus_20[genbank_20GCA_5F900006255.1_202015-01-05] 572 sequences; 22,032,815 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq283 125 8e-24 >seq283 Length=1466191 Score = 125 bits (138), Expect = 8e-24 Identities = 306/462 (66%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | ||||| |||| ||||| || ||||| | || ||| | ||| || | Sbjct 590618 TCATAAACAAGTCTGGAGTCCAGAGAGCGTAGAACAAATCACGAGCTCTAACTTCCTCTT 590559 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 |||| ||| | ||| || | || || | | ||| | |||||||| || |||| Sbjct 590558 TGCCGTGGTTCTTGCGAAGGTCCAAGAACTCAAAAACATCGGAGTGCCATGGCTCCAAAT 590499 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | ||||||| || |||||||||||||| |||| ||| || ||||| |||| Sbjct 590498 AGATGGCAAAAGCACCTGGGCGCTTATTACCTCCTTGGTCTACATACCTCGCAGTGTTGT 590439 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 |||| || | | ||| |||||||| ||||| || ||| ||||| || || || Sbjct 590438 TATAGACGCGGAGCATGGGGACAATTCCATTAGAAGAACCGTTGGTGCCACCGATGTAGG 590379 Query 48451 TTCCACTAGCTCTTATATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 || |||| | || | | ||| | ||| || ||||| ||| | || || || Sbjct 590378 AGCCTGTAGCACGAATTCTGTGGACGTTG--AGACCGATGCCACCGGCCGTCTTGGAGAT 590321 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 | || || || | || ||||| || ||||| || ||||| | |||||| | Sbjct 590320 CATTGCGCAAGTCTTTAACGTGTCATAGATGCCTTCAATGCTATCCGCCTTCATATCGAC 590261 Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628 || |||||| | | ||| | || ||| || | ||||||||||| || || || Sbjct 590260 CAGGAAACAAGAGGCTAATTGGGCCTGCGGAGTACCAGCGTTAAATAATGTCGGCGAAGC 590201 Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 ||| | || | |||| || | ||| | ||| ||||| || Sbjct 590200 ATGTGTGAAGTACTTCTGAGACATCAAGTGATAAGTTTCGAT 590159 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 ||| || ||||| ||| || || || ||||| | |||| || ||||| || || Sbjct 249257 CAAGCAAGCAAAGTCAGTGTGGAGACCTTCGTCACGCGAGATCAGCTCGTTAGAGAAGGT 249198 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | || |||||||| || | || || | |||||| || || || || || |||||||| Sbjct 249197 AAGGCCTGGCATCAGACCGCGCTTCTTCAGCCAGAAGATCGATGCGAAAGACCCAGAAAA 249138 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTC 19111 ||| ||||| || || |||||||| ||||| |||| Sbjct 249137 GAAGATACCCTCAACAGCTGCAAAGGCAACAAGTC 249103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104780922080