Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 255 6e-63 seq72 147 2e-30 seq21 147 2e-30 seq47 132 5e-26 >seq1 Length=3626568 Score = 255 bits (282), Expect = 6e-63 Identities = 329/449 (73%), Gaps = 4/449 (1%) Strand=Plus/Plus Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042 ||||||||| ||||| ||| ||||| ||| | | || || |||| | | ||||||| Sbjct 1873292 GAAGGCCGATTGGGCCCTGAAGTGGATTACCGACCGGAAGTCCACCTTTGCCCAGCGCCT 1873351 Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 | | |||||||| ||||||||||| ||||||| ||| ||||| |||| || || Sbjct 1873352 GATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCGTCCATCTTCTG 1873411 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 ||| ||||| |||||||| |||||||||||||| ||| ||||||||||||||| | || Sbjct 1873412 GCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGCGA 1873471 Query 117163 CGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222 |||||| ||||| |||||| ||||| |||||||| ||| || | | || ||||| Sbjct 1873472 CGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCTGAAGAACCGCCCGAG 1873531 Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | || | |||| | || || ||||||| || || | ||||||||| |||||||| Sbjct 1873532 CAAGGAGATCGTCCAGAAGGTCATCACCGATGCCGTGGAGATCGAGCAGGAGTTCCTCAC 1873591 Query 117283 CGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATC 117340 ||| || ||||| |||| ||||| || | || || || | ||| ||| |||||| Sbjct 1873592 CGAGGCCCTGCC-CTGCGCCCTGCTCGGCATGAA-CGCCAACCTCATGAAGCAGTACATC 1873649 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||||||| | ||||| ||| || | | || |||| |||| | | || Sbjct 1873650 GAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGCAACGACAAGGTCTACCGCTCCACC 1873709 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||| | ||||| ||| | |||||| Sbjct 1873710 AACCCCTTCGACTTCATGGAGAACATCTC 1873738 Score = 141 bits (156), Expect = 1e-28 Identities = 205/286 (72%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||| || || |||||||||| ||| ||| | |||||| Sbjct 1872884 ATCTGGCAGATGTACAAGAAGCACGAAGCATCCTTCTGGACCGCCGAAGAGATCGACCTG 1872943 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | | | ||| ||||| || | Sbjct 1872944 TCCAAGGATCTCCA-CGACTGGAACAACAGACTCACCGATGACGAGAAGTTCTTTGTTTC 1873002 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||| | || ||||| |||||||| || ||||| ||||||||||| || |||||||| Sbjct 1873003 GCACATCCTTGCCTTCTTCGCCGCGTCTGATGGCATTGTCAACGAGAACCTTGTCGAGCG 1873062 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | || || ||| | |||||||||| ||||||||||| || || ||| || Sbjct 1873063 GTTCAGTGGCGAAGTCCAGATTCCCGAGGCGCGATGCTTCTACGGTTTCCAAATCATGAT 1873122 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || ||||||||||||||| Sbjct 1873123 GGAGAACATCCACTCCGAGACCTACTCTCTGCTCATCGACACGTAC 1873168 >seq72 Length=40277 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| |||| || || | | | Sbjct 18879 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC 18820 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||||||||| |||||||| Sbjct 18819 GACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 18760 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || |||| || |||||| ||||||||| Sbjct 18759 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCTCGGACTACAAC 18700 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||| ||| || || || || ||||| || | || |||| Sbjct 18699 ATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGCGGAGGCG 18651 >seq21 Length=521316 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| ||||||||| | || ||||| || Sbjct 163882 AAGATGCAGATCTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCC 163823 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| ||||| ||| || | ||||| |||||||| || | || Sbjct 163822 TCGGACACTATCGACAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCGCCCGA 163764 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| ||||||| || ||||| ||||| || || | ||||||||| ||||| Sbjct 163763 CCAGCAACGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCTGACTA 163704 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| ||| || || || || Sbjct 163703 CAACATCCAGAAGGAGAGCACCCTTCACCTGGT 163671 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||||||| | || ||||| | | Sbjct 163371 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 163312 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| ||||| | ||||| ||||| ||||| | ||||| Sbjct 163311 GATACCATCGACAACG-TGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCA 163253 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| |||| ||| || || ||| |||| |||| || || || | ||||||||| Sbjct 163252 ACAGCGACTTATCTTCGCCGGTAAGCAGTTGGAGGACGGCCGAACGCTAAGCGACTACAA 163193 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | |||||||| || || Sbjct 163192 CATCCAGAAGGAATCGACGCTGCACCTGGT 163163 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || || || || |||||| |||| || || || |||||| | | Sbjct 163589 TCGTCAAGACCCTGACCGGAAAGACGATCACCCTCGAGGTTGAGTCCTCCGACACCATTG 163530 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| ||| |||| ||||| |||||||| || | |||||||| ||| | Sbjct 163529 ACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGATTG 163471 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || ||||| |||||||||||| |||||| Sbjct 163470 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAG 163411 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || || || || Sbjct 163410 GAGTCCACCCTCCACCTCGT 163391 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || |||||||| | || || || | | Sbjct 163143 ATGCAGATCTTCGTCAAGACTCTTACGGGGAAGACCATCACGCTGGAGGTTGAGTCATCG 163084 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || |||| ||||| || ||||| ||| |||| ||| Sbjct 163083 GACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAG 163024 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| || || |||||||| |||| || || | | |||||||||| Sbjct 163023 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGTCGTACGTTGAGCGACTACAAC 162964 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| ||| || || Sbjct 162963 ATCCAGAAGGAGAGCACCCTCCA 162941 >seq47 Length=1462733 Score = 132 bits (146), Expect = 5e-26 Identities = 144/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 40692 GCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||| ||||| || || || |||||||| ||||||||| |||| || || | || Sbjct 1313598 GCAAATAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 1313657 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||||||||| |||||||| Sbjct 1313658 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 1313717 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || || | || |||||| |||||||||| Sbjct 1313718 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 1313777 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 1313778 ATCCAGAAGG 1313787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218555976000