Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq72 136 5e-27 seq21 127 2e-24 seq47 96.9 4e-15 >seq72 Length=40277 Score = 136 bits (150), Expect = 5e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| || | ||||||||||| || || ||||| || | || ||||| || Sbjct 18665 CGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGGCCG 18724 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | || | || ||||||| Sbjct 18725 TCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 18784 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| | | | ||||||||||| ||||| |||| ||||| Sbjct 18785 TCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATA 18844 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| || ||||| ||||| Sbjct 18845 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 18879 >seq21 Length=521316 Score = 127 bits (140), Expect = 2e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| |||| || || || | || || |||||||| ||| Sbjct 163683 GTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 163742 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || ||||| || |||||||||| ||| | || |||||||||| ||| ||| ||| Sbjct 163743 GCAAAGATGAGACGTTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTTGACTTG 163802 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | ||||| || || || || | |||||||| |||||||| || || Sbjct 163803 A-CGTTGTCGATAGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGAGT 163861 Query 43166 CTTTACAAAGATTTGCATTTTTACGCCGA 43194 ||| || ||||| ||||| || || ||| Sbjct 163862 CTTGACGAAGATCTGCATCTTGGCGGCGA 163890 Score = 111 bits (122), Expect = 2e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| || || || | | ||||| ||||| || | ||||||||||| || || ||||| Sbjct 162910 CTACTGCCCACCACGGAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTA 162969 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || || || |||| || ||||||||||||||||| ||||| |||||||| || Sbjct 162970 GTCGCTCAACGTACGACCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGATC 163029 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCG 43128 | || | || ||||||||| ||| | || | || | | | | ||||| | Sbjct 163030 CGGGGGAATGCCTTCCTTGTCC-TGAATCTTGCTCTTCACATTGTCGATGGTGTCCGATG 163088 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || | ||||||||| || ||||| || ||||| || ||||| ||||| Sbjct 163089 ACTCAACCTCCAGCGTGATGGTCTTCCCCGTAAGAGTCTTGACGAAGATCTGCAT 163143 Score = 102 bits (112), Expect = 9e-17 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || || || | || || ||||||||||||||||| Sbjct 163408 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAA 163467 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | |||||||||||||| || | || |||||||||| ||| | |||| |||| || Sbjct 163468 GATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC-TGAATCTTTGACTTGA-CG 163525 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | |||||| || || || |||| ||||| || || || || || ||||| Sbjct 163526 TTGTCAATGGTGTCGGAGGACTCAACCTCGAGGGTGATCGTCTTTCCGGTCAGGGTCTTG 163585 Query 43170 AC 43171 || Sbjct 163586 AC 163587 >seq47 Length=1462733 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || | || || |||||||| || ||||| | Sbjct 1313787 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 1313728 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | || ||||||||||| | || | || |||||||||| ||| | || | |||| | Sbjct 1313727 TCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTTCGACTTGACATTG 1313669 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| ||| ||||| |||| |||||||| |||||||| || ||||| || Sbjct 1313668 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 1313609 Query 43173 AA 43174 || Sbjct 1313608 AA 1313607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816885228000