Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq72 127 2e-24 seq21 120 2e-22 seq47 98.7 8e-16 >seq72 Length=40277 Score = 127 bits (140), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||| ||||||||||| || || |||| || Sbjct 18671 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCG 18730 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| ||||| | |||||||||||| Sbjct 18731 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 18790 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || |||||| Sbjct 18791 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTG 18850 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 ||||| || ||||| || ||||| |||||| |||||| Sbjct 18851 CCCGTGAGGGTCTTGACGAAGATCTGCATGATTGCCT 18887 >seq21 Length=521316 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 162935 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTACGACCGTCCTCC 162994 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| || || || || | || ||||||||| | Sbjct 162995 AGCTGCTTACCAGCGAAAATGAGACGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 163054 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||| ||||||| || || ||||| Sbjct 163055 ATCTTGCTCTTCACATTGTCGATGGTGTCCGATGACTCAACCTCCAGCGTGATGGTCTTC 163114 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||||||| || ||||| ||||| Sbjct 163115 CCCGTAAGAGTCTTGACGAAGATCTGCAT 163143 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| |||||||| |||||||||||| | || || |||| ||| Sbjct 163163 ACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTTAGCGTTCGGCCGTCCTCC 163222 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| || | |||||||||||||| || | ||||||||||||| Sbjct 163223 AACTGCTTACCGGCGAAGATAAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGG 163282 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | ||| ||| ||||| | ||| || |||||| Sbjct 163283 ATTTTGCTCTTCACGTTGTCGATGGTATCCGACGACTCGACCTCAAGGGTGATGGTCTTG 163342 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||| ||||| Sbjct 163343 CCGGTCAGCGTCTTGACGAAGATCTGCAT 163371 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||| ||||||||||| || ||| | || || Sbjct 163671 ACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 163730 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || || |||||||| || | |||||||||||| Sbjct 163731 AGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGG 163790 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | ||||| ||| ||||||| ||| || |||||| Sbjct 163791 ATCTTTGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTG 163850 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| |||||||| || ||||| ||||| ||| Sbjct 163851 CCCGTGAGAGTCTTGACGAAGATCTGCATCTTG 163883 Score = 105 bits (116), Expect = 5e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAG 45189 ||| || ||| |||||||||||||||||||||| || | ||| ||| ||| || Sbjct 163396 GTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCG---AG 163452 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || || || ||||| ||||| ||||| ||||||||||| | |||||||||||| ||| Sbjct 163453 CTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAAT 163512 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 ||| ||| || | | | |||| ||| ||||| | ||| |||||||| || Sbjct 163513 CTTTGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCGAGGGTGATCGTCTTTCC 163572 Query 45310 CGTCAGAGTCTTCAC 45324 ||||| ||||| || Sbjct 163573 GGTCAGGGTCTTGAC 163587 >seq47 Length=1462733 Score = 98.7 bits (108), Expect = 8e-16 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||| |||||||||||| || | ||| ||| ||| || || || ||||||| Sbjct 1313787 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG---AGCTGCTTGCCGGCGA 1313731 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | |||| ||||| ||||| ||||| | |||||||||||| ||| || ||| || Sbjct 1313730 AAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACAT 1313671 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| ||||||||| | ||| || |||||||||||||| ||||||| Sbjct 1313670 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 1313611 Query 45324 CAAA 45327 | || Sbjct 1313610 CGAA 1313607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074718502100