Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15 405 5e-108 seq1 187 2e-42 seq21 113 4e-20 seq47 105 6e-18 seq72 98.7 9e-16 >seq15 Length=644973 Score = 405 bits (448), Expect = 5e-108 Identities = 1227/1877 (65%), Gaps = 46/1877 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || || || |||| ||| ||||| | | || || || || |||||||| Sbjct 159662 CTGGTCGACGGTGAATTGGATGGGGTTGGCGGCAGCCTGAGTACGGAGGTAGTACATGCC 159721 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| ||||| | |||||| | || || || || | || || | || Sbjct 159722 CGTCTTGAGACCGAGCTTCCAACCAGTGAAGTGCATGCTGGTGATCTTGCCCATGGTAGG 159781 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | || | ||||||| ||| || || || || || || ||||| || Sbjct 159782 CTCACGCATGTGAATGTTCAGCGACTGAGACTGGTCAATGAATGCGCCACGGTCGGCAGC 159841 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| | | | || ||| || |||||||| || |||||||| || | |||| || Sbjct 159842 CATCTGGACGACCGTCCGCTGAGAAATTTCCCAGACTGTCTTGTAAAGAGACTTGATGTC 159901 Query 22345 TAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | ||| | || | || | |||| | ||| ||| | | ||||| || || | Sbjct 159902 TG-CGGGAACGTTGGGAATGTTCTGAATGGAGCCGCCTTCGGCAATGATGCGGTTCTTCA 159960 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | |||| ||| | ||| || | | || |||| ||| | |||| || || | Sbjct 159961 TGCCATCGGACCAAAGACCCATATCCACGAGGTCCTTGAGCAGCCAAGGGTTGACGACCT 160020 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | |||||||| | | ||| ||||| ||| |||||||| ||| | || |||||| ||| Sbjct 160021 GGAACTCGCCAGCAAGGACACGGCGAGAGTAGATGTTGGAGGTGTAAGGCTCGAAACATT 160080 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| ||||| ||||| | ||| || || ||||| || |||| || | || Sbjct 160081 CGTTGTTGCCCAGGATCTGGGAGGTACTGGCAGTGGGCATAGGGGCCACCAACAAACTGT 160140 Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 ||| || || | || |||| | | || | ||| | ||||||||| || ||||| Sbjct 160141 TTCGCACACCATTCTGCTTGATCTGGTCCT--TCAGCGTTTCCCAGTCCCAAAGGTCGGA 160198 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 |||||| ||||| |||||| ||||| || | | ||| | | || |||||| Sbjct 160199 CGGCGTGACATT---CCACATGTCGTACTGGAGTATGCCCTGTGAGACAGGAGAGCCTTC 160255 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 ||| || ||| || || | | | |||| ||| || ||| ||| || ||| Sbjct 160256 GTAAGTGGAGTATGGGCCCTCCACCTTAGCAATTTCCGAGGACGCTGTCAAGGCAGCGTG 160315 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTACG 22817 || || ||||||||||| | |||||||| | || |||||| ||| | | Sbjct 160316 GTAGATTGTCTCGAAGATCTGCTTGTTCAGCTGTCTAGCCTCTGGCGAC----TCGAAAG 160371 Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 |||| || | | || ||| | ||| || | ||||||||| |||| ||||| || |||| Sbjct 160372 GCATGCGAAGCGCCAAGAAGGTGTCAGCAAGACCCTGAACACCTAGGCCGATGGGACGGT 160431 Query 22878 TTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCT 22935 | || || | || |||||| || | ||| || | ||| ||||| | | Sbjct 160432 GTCGCATGTTG--CTGTTGCGTGCCTCCGGGACAGGGTAGTAGTTCACGTCGATGATCTT 160489 Query 22936 GTTCAAGTTTCTGGTC-ACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGC 22994 ||||| ||| ||| | || | | || | | |||||||| |||| Sbjct 160490 GTTCAGGTTG-TGGACGACGACCTGGGTAACTTCGTGAAGCTTCTGGAAGTCGTATACGC 160548 Query 22995 C--CGATTGTA---CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049 | || ||||| || ||| || | || ||| || || | ||||| || || || Sbjct 160549 CTTCG-TTGTAGTCCACGAAAGATGGTAGCG-CGAGAGATGCCAAGTTGCAGACAGCGAC 160606 Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATT---GCTACACTTTATCGT 23106 ||| || || || |||||| |||||||| || || || || ||| | || || Sbjct 160607 CTCATCGGGGGCCGAGTACTCCACAATTTCAGTGCACAGGTTTGAGCTGCGA---ATGGT 160663 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||| | || |||||||||| || || ||||| |||||||||||||||| | || | Sbjct 160664 GCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTT 160723 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 ||| |||||| ||| | |||| || || ||||| |||| || | || | || Sbjct 160724 GCCAGTCTCGGTCTGAGCTTCGAGAATGGCATACCACAGCTTCTGGGCCTTGAC-CTTCT 160782 Query 23227 CACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-A 23284 ||| | | ||| || |||||||||| | |||||| || || || || ||||||| | Sbjct 160783 GACGGCCGCGGCCCTCAGCCTCGTACTTCTCGTACAAGGCCTCGAACTCATCACCGTAGA 160842 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 || ||||| ||||| || | | |||| ||||||||| ||||| || || || Sbjct 160843 CA-TCGGCTAGGCCAGGGCACTCGTTCGGGCACATGAGAGTCCACTCGCCGTTCTTCTCG 160901 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || || |||| ||||| || || ||||| ||||| ||| || ||||| || || | | Sbjct 160902 ACACGCTTCATGAAAAGGTCGGGAATCCAAAGAGCAAGGAAGAGGTCGCGAGCACGGATC 160961 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 |||||||| ||| |||||| | ||| | || || || || |||| ||||||||| Sbjct 160962 TCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAAACATCCGAGTGCCACGGC 161021 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || | ||| | |||||| || || || | ||| ||||| |||||||| || || | || Sbjct 161022 TCCAAGTAGATGGCAAAGGCACCAGGCCGCTTGTTGCCACCCTGATCAACATATCTCGCG 161081 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 ||||||||| | || | ||||| || |||| ||| ||||||| ||| || || Sbjct 161082 GTGTTGTTGAAGACACGGAGCATAGGGACGATACCATTGGACGTTCCGTTAGTACCGGCG 161141 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | ||| || | || |||| || | | ||||| || || ||| || || Sbjct 161142 ATGTACGAGCCAGTGGCACGAATACGATGGATATTCAAACCGATACCACCGGCCATCTTG 161201 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || ||||| || || |||||| || |||||||| ||||||||||| || || || | Sbjct 161202 GAGATCATAGCACAAGTTTTCAGGGTATCGTAGATACCCTCGATGCTATCATCCTTCATA 161261 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 |||| | ||| || || || | ||||| | || ||| | || ||| || || ||| Sbjct 161262 TCGACAAGGAAGCAGGATGAAAGCTGCGCCTGAGGTGTACCAGCGTTGAAAAGGGTTGGG 161321 Query 23765 CTGGCGTGCGTAAAGTAT---CCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821 ||| || || |||||| ||| ||||| || ||||| || || ||| | || Sbjct 161322 GAGGCATGAGTGAAGTATTTGCCA---GACATGAGGTTGTAGGTCTCAATGACCTTCTCT 161378 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 | | || || ||||||| || || ||||| ||||||| || ||||||||||| Sbjct 161379 ACATTGTCACCCCAGATACCGACAGCAACACGCATAATCATGTGCTGCGGTCTCTCGACG 161438 Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 | ||| | | || | || || || || | || || || || || || || | Sbjct 161439 ATCTTGCCATCGAGCTTCAGAAGGTAGGACCGCTCCAAAGTCTTGAAGCCGAAGTATTGG 161498 Query 23942 TAGTTAAAGTCACGATC 23958 ||||| ||||| || || Sbjct 161499 TAGTTGAAGTCTCGGTC 161515 >seq1 Length=3626568 Score = 187 bits (206), Expect = 2e-42 Identities = 343/497 (69%), Gaps = 8/497 (2%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| || ||| || | || ||||| |||||||||||||| ||||| ||||| ||| Sbjct 1873333 CCACCTTTGCCCAGCGCCTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCG 1873392 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||| ||| | || || ||| ||||||| ||||||||||||||||||||||| || || Sbjct 1873393 CCTTCGCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCA 1873452 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| | || |||||||||||||| || || || || || || ||||| ||| ||| | Sbjct 1873453 ACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGC 1873512 Query 58138 ACATTGTCAATAAACCGA-CGCGG-GATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 || | || |||| | || ||||| || | | | |||||||| || || | Sbjct 1873513 ACCTGAAGAACCGCCCGAGCAAGGAGATCG--TCCAGAAGGTCATCACCGATGCCGTGGA 1873570 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255 |||||| | ||||| ||||||| ||||| || ||| ||||||| |||||| | Sbjct 1873571 GATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCAA 1873630 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGA 58313 | ||| ||||||| ||||| || |||||| | || | ||| || | || Sbjct 1873631 CCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGCAACGA 1873690 Query 58314 GAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGC 58373 | ||| ||| | | | || || || || || ||| | |||||||||| ||| Sbjct 1873691 CAAGGTC--TACCGCTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGC 1873748 Query 58374 AAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGT 58433 ||||| ||||| ||||| || || |||| || || || |||||| ||| | | Sbjct 1873749 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCGGCGTCATGGCCAGC 1873808 Query 58434 AACAAGTTGGAGGACGA 58450 | |||| | | ||||| Sbjct 1873809 ACCAAGAAGAACGACGA 1873825 >seq21 Length=521316 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || |||| Sbjct 163371 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 163312 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| ||||||||| || | ||||||||||| Sbjct 163311 GATACCATCGACAACGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCAA 163252 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || |||||||| ||| || | ||||| || ||| Sbjct 163251 CAGCGACTTATCTTCGCCGGTAAGCAGTTGGAGGACGGCCGAACGCTAAGCGACTACAAC 163192 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || |||||||| || || ||||| || Sbjct 163191 ATCCAGAAGGAATCGACGCTGCACCTGGTTCT 163160 Score = 104 bits (114), Expect = 2e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| |||||||| || ||||| || |||||| | || || || | Sbjct 163882 AAGATGCAGATCTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCC 163823 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| | ||||| || ||| | ||||||||| ||| | |||||||| Sbjct 163822 TCGGACACTATCGACAACGTCAAGTCAAAGA-TCCAGGACAAGGAGGGCATTCCGCCCGA 163764 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| ||||| || || |||||||| ||| | || || Sbjct 163763 CCAGCAACGTCTCATCTTTGCTGGCAAGCAGCTCGAGGA 163725 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || || ||||| | || ||||| | || Sbjct 163143 ATGCAGATCTTCGTCAAGACTCTTACGGGGAAGACCATCACGCTGGAGGTTGAGTCATCG 163084 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||||||| | || || || ||| Sbjct 163083 GACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAG 163024 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| ||| | || ||||||| || ||| Sbjct 163023 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGTCGTACGTTGAGCGACTACAAC 162964 Query 31373 ATTCAAAAAGA 31383 || || || || Sbjct 162963 ATCCAGAAGGA 162953 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| ||||| || || ||||||||| |||| ||||| | ||||||| | | Sbjct 163589 TCGTCAAGACCCTGACCGGAAAGACGATCACCCTCGAGGTTGAGTCCTCCGACACCATTG 163530 Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | ||||| || ||| | ||||||||| ||| | || |||||||||||||| | Sbjct 163529 ACAACGTCAAGTCAAAGATTCA-GGACAAGGAGGGCATTCCTCCCGACCAGCAGCGATTG 163471 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| || ||| | || || || | ||| || |||||||| || Sbjct 163470 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAG 163411 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || ||| | || | || |||| Sbjct 163410 GAGTCCACCCTCCACCTCGTTCTTCGTCTCCGCGGTGGTA 163371 >seq47 Length=1462733 Score = 105 bits (116), Expect = 6e-18 Identities = 117/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 31195 GCAAAT--TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||| |||||| ||||| ||||| ||||| || |||||| |||| || || ||||| Sbjct 1313598 GCAAATAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 1313657 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 1313658 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 1313717 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||| ||||| ||| | || || Sbjct 1313718 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGA 1313752 >seq72 Length=40277 Score = 98.7 bits (108), Expect = 9e-16 Identities = 122/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| |||| || || Sbjct 18884 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGT 18825 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGC 31304 || ||||| |||| | ||||| ||| || | | ||||||||| ||| | || | Sbjct 18824 CGAGCGACACCATCGACAATGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATCCCTC 18768 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 | |||||||||||||| || ||||| ||||| ||| | || ||| Sbjct 18767 CGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGAC 18724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765842792000