Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15 214 2e-50 >seq15 Length=644973 Score = 214 bits (236), Expect = 2e-50 Identities = 594/902 (66%), Gaps = 18/902 (2%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || | |||| | | | | ||| || || | ||| ||||| | | | Sbjct 160824 TCGAACTCATCACCGTAGACATCGGCTAGGCCAGGGCACTCGTTCGGGCACATGAGAGTC 160883 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 ||||| |||| | || || || ||||| || || || |||||||||||||| | || Sbjct 160884 CACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAAAGAGCAAGGAAG 160943 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 || || | | | ||||| || || ||||| ||||| |||||| | | | Sbjct 160944 AGGTCGCGAGCACGGATCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAA 161003 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | ||| || |||||||| |||||||| ||||| | | |||||||| ||||| || ||| Sbjct 161004 ACATCCGAGTGCCACGGCTCCAAGTAGATGGCAAAGGCACCAGGCCGCTTGTTGCCACCC 161063 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 ||||| | ||||| |||||||| || | || | | ||| || | ||||| || || Sbjct 161064 TGATCAACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGGACGATACCATTGGAC 161123 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCT 63548 | || || ||||||| ||| || ||| ||||||||||| | || | ||| Sbjct 161124 GTTCCGTTAGTACCGGCGATGTACGAGCCAGTGGCACGAATACGATGGATATTCAAACCG 161183 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 || || || ||||| || ||||| | || || ||| | || || ||||| || || Sbjct 161184 ATACCACCGGCCATCTTGGAGATCATAGCACAAGTTTTCAGGGTATCGTAGATACCCTCG 161243 Query 63609 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCC 63668 ||||||||||| |||| | | || || ||| || | || ||| || || Sbjct 161244 ATGCTATCATCCTTCATATCGACAAGGAAGCAGGATGAAAGCTGCGCCTGAGGTGTACCA 161303 Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 || || || | ||| || || || || || || |||| |||| | || ||||| ||| Sbjct 161304 GCGTTGAAAAGGGTTGGGGAGGCATGAGTGAAGTATTTGCCAGACATGAGGTTGTAGGTC 161363 Query 63729 TCAAT-AGCTGAGTCTATATCCCATTGATGA------ATTCCTACTGCGACACGCATTAA 63781 ||||| | || ||| || ||||| | | || || || || |||||||| | Sbjct 161364 TCAATGACCT---TCTCTA---CATTG-TCACCCCAGATACCGACAGCAACACGCATAAT 161416 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| ||||| || || || ||| | | |||| | |||||| ||||| Sbjct 161417 CATGTGCTGCGGTCTCTCGACGATCTTGCCATCGAGCTTCAGAAGGTAGGACCGCTCCAA 161476 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 ||| || || || || || | ||| |||||||| || || | |||| | || | || Sbjct 161477 AGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCATAGACAATAGCAGAGTCGAA 161536 Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAATACT-TGAAATAATCGGAGAATGTT 63960 | ||||| | | | |||| | | ||| | || | ||| || || || | Sbjct 161537 ATCCTCCTTGTGTCTCATAAC-ACAATCATACGTCTCCTGGGCAATCATGGGGGATGCCT 161595 Query 63961 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttt 64019 | |||||| | || || ||||||| | | | || | || || | || | || Sbjct 161596 TGCCATTTCTGGGGTTGACATAGTGGTAGAGGTCACTGACGAC-AGACGACCATTGCTTC 161654 Query 64020 tttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGA 64079 ||||| | |||||| || ||||| | ||| || | ||||| || |||||||| || || Sbjct 161655 TTTGTCTGCTTGTGGAGGTTTGACACGGCGATACGTGCGGCGAGGATGGCATAGTCAGGG 161714 Query 64080 TG 64081 || Sbjct 161715 TG 161716 Score = 105 bits (116), Expect = 8e-18 Identities = 354/548 (65%), Gaps = 15/548 (3%) Strand=Plus/Plus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | |||||||| ||||| || || | | ||||| || |||||||| Sbjct 159660 TCCTGGTCGACGGTGAATTGGATGGGGTTGGCGGCAGCCTGAGTACGGAGGTAGTACATG 159719 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 ||||| || |||||||| |||| || || ||||| || || | ||| | Sbjct 159720 CCCGTCTTGAGACCGAGCTTCCAACCAGTGAAGTGCATGCTGGTGATCTTGCCCATGGTA 159779 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 || || || || || |||| || ||| || || ||||| || || | ||| ||| Sbjct 159780 GGCTCACGCATGTGAATGTTCAGCGACTGAGACTGGTCAATGAATGCGCCACGGTCGGCA 159839 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 ||||| | | || |||| || | ||||||||| | || || |||| ||| || Sbjct 159840 GCCATCTGGACGACCGTCCGCTGAGAAATTTCCCAGACTGTCTTGTAAAGAGACTTGATG 159899 Query 62274 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330 ||| | |||| ||| | | ||||||||||| || || || | || || | ||||| Sbjct 159900 TCTGCGGGAACGTTGGGAATGTTCTGAATGGAGCCGCCTTCGGCAATGATGCGGTTCTTC 159959 Query 62331 ATCTCATCATTCCATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAA 62385 || |||| ||| | || | | | ||| | | || || ||||| | Sbjct 159960 ATGCCATCGGACCAAAGACCCATATCCACGAGGT-----CCTTGAGCAGCCAAGGGTTGA 160014 Query 62386 CTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62445 | || ||||| || |||| | || | |||| ||| || || ||| || || || | Sbjct 160015 CGACCTGGAACTCGCCAGCAAGGACACGGCGAGAGTAGATGTTGGAGGTGTAAGGCTCGA 160074 Query 62446 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62505 | || || || |||| || || | || ||||| |||||||| |||||||| | Sbjct 160075 AACATTCGTTGTTGCCCAGGATCTGGGAGGTACTGGCAGTGGGCATAGGGGCCACCAACA 160134 Query 62506 AACTATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 |||| |||| | ||| | || | |||| | || || || |||||| | |||||| Sbjct 160135 AACTGTTTCGCACACCATTCTGCT-TGATCTGGTCCTTCAGCGTTTCCCAGTCCCAAAGG 160193 Query 62565 TCCGACGG 62572 || ||||| Sbjct 160194 TCGGACGG 160201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816812728000