Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 237 2e-57 seq1 89.7 7e-13 >seq15 Length=644973 Score = 237 bits (262), Expect = 2e-57 Identities = 599/902 (66%), Gaps = 18/902 (2%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 |||||||| || || | ||| | ||| ||||| || || ||||| ||||| | | | Sbjct 160824 TCGAACTCATCACCGTAGACATCGGCTAGGCCAGGGCACTCGTTCGGGCACATGAGAGTC 160883 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||||| || | | | || || ||||| || || || |||||||||||||| | || Sbjct 160884 CACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAAAGAGCAAGGAAG 160943 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 || || | | | |||||| || || ||||| ||||| |||||| | | | Sbjct 160944 AGGTCGCGAGCACGGATCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAA 161003 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | ||| || |||||||| |||||||| ||||| | | || ||||| ||||| || ||| Sbjct 161004 ACATCCGAGTGCCACGGCTCCAAGTAGATGGCAAAGGCACCAGGCCGCTTGTTGCCACCC 161063 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||| | ||||| |||||||| || | || | | ||| || | ||||||||||| Sbjct 161064 TGATCAACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGGACGATACCATTGGAC 161123 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGCTAATTGATAGAC 72301 | || || || |||| ||| || ||| ||||||||||| || ||| | || Sbjct 161124 GTTCCGTTAGTACCGGCGATGTACGAGCCAGTGGCACGAATACGATGGATATT--CAAAC 161181 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || ||||| || ||||| | || || ||| | ||||| ||||| |||| Sbjct 161182 CGATACCACCGGCCATCTTGGAGATCATAGCACAAGTTTTCAGGGTATCGTAGATACCCT 161241 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | || ||||||||| |||| | | || || ||| || | || || || | Sbjct 161242 CGATGCTATCATCCTTCATATCGACAAGGAAGCAGGATGAAAGCTGCGCCTGAGGTGTAC 161301 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | || || || | ||| || || || || || || |||| |||||| || ||||| | Sbjct 161302 CAGCGTTGAAAAGGGTTGGGGAGGCATGAGTGAAGTATTTGCCAGACATGAGGTTGTAGG 161361 Query 72482 TCTCAATAGCTGATTCTATATCCCATTG-----ATGTATTCCTACCGCGACACGCATTAA 72536 ||||||| | |||| || ||||| || || || || |||||||| | Sbjct 161362 TCTCAATGAC--CTTCTCTA---CATTGTCACCCCAGATACCGACAGCAACACGCATAAT 161416 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| ||||| || ||||||||| || | |||| | |||||| ||||| Sbjct 161417 CATGTGCTGCGGTCTCTCGACGATCTTGCCATCGAGCTTCAGAAGGTAGGACCGCTCCAA 161476 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || || || || | ||| |||||||| || || | |||| | || | || Sbjct 161477 AGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCATAGACAATAGCAGAGTCGAA 161536 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAATGTT 72715 | ||||| | | | |||| | | ||| | || | ||| || || || | Sbjct 161537 ATCCTCCTTGTGTCTCATAAC-ACAATCATACGTCTCCTGGGCAATCATGGGGGATGCCT 161595 Query 72716 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttt 72774 | |||||| | || || ||||||| | | | || | || || | || | || Sbjct 161596 TGCCATTTCTGGGGTTGACATAGTGGTAGAGGTCACTGACGAC-AGACGACCATTGCTTC 161654 Query 72775 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGA 72834 ||||| | |||||| || ||||| ||||| || | ||||| || |||||||| || || Sbjct 161655 TTTGTCTGCTTGTGGAGGTTTGACACGGCGATACGTGCGGCGAGGATGGCATAGTCAGGG 161714 Query 72835 TG 72836 || Sbjct 161715 TG 161716 Score = 118 bits (130), Expect = 1e-21 Identities = 357/548 (65%), Gaps = 15/548 (3%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || || || ||||| || || || | ||||| || ||||||||| Sbjct 159660 TCCTGGTCGACGGTGAATTGGATGGGGTTGGCGGCAGCCTGAGTACGGAGGTAGTACATG 159719 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || |||||||| |||| || || ||||| || || | ||| | || Sbjct 159720 CCCGTCTTGAGACCGAGCTTCCAACCAGTGAAGTGCATGCTGGTGATCTTGCCCATGGTA 159779 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || |||||||| |||| ||||||| || || ||||| || || | ||| ||| Sbjct 159780 GGCTCACGCATGTGAATGTTCAGCGACTGAGACTGGTCAATGAATGCGCCACGGTCGGCA 159839 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| | | || |||| || | ||||||||| | || || |||| ||| || Sbjct 159840 GCCATCTGGACGACCGTCCGCTGAGAAATTTCCCAGACTGTCTTGTAAAGAGACTTGATG 159899 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 ||| | |||| ||| | | ||||||||||| || || || ||||| || | || || Sbjct 159900 TCTGCGGGAACGTTGGGAATGTTCTGAATGGAGCCGCCTTCGGCAATGATGCGGTTCTTC 159959 Query 71086 ATCTCTTCATTCCATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAA 71140 || | || ||| | || | | | ||| | | || || ||| || | Sbjct 159960 ATGCCATCGGACCAAAGACCCATATCCACGAGGT-----CCTTGAGCAGCCAAGGGTTGA 160014 Query 71141 CTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCA 71200 | || || || || |||| | || | |||| ||| || || ||| || || || | Sbjct 160015 CGACCTGGAACTCGCCAGCAAGGACACGGCGAGAGTAGATGTTGGAGGTGTAAGGCTCGA 160074 Query 71201 CTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 71260 | || || || |||| || || | || ||||| |||||||| |||||||| | Sbjct 160075 AACATTCGTTGTTGCCCAGGATCTGGGAGGTACTGGCAGTGGGCATAGGGGCCACCAACA 160134 Query 71261 GACTATTTCTAAGACCA-TGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGA 71319 ||| |||| | |||| | || | ||| | || || || | |||||| | |||||| Sbjct 160135 AACTGTTTCGCACACCATTCTGCT-TGATCTGGTCCTTCAGCGTTTCCCAGTCCCAAAGG 160193 Query 71320 TCCGATGG 71327 || || || Sbjct 160194 TCGGACGG 160201 >seq1 Length=3626568 Score = 89.7 bits (98), Expect = 7e-13 Identities = 151/217 (70%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || ||||| ||| |||||| ||||| || | || | |||||||| Sbjct 1873507 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAG 1873448 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || |||||||| ||||| ||||| || ||||| || || ||||| || | || Sbjct 1873447 AAGGTCAGGCCGGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGACGCGAAGGCGCCG 1873388 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 |||||||| || || || || || ||||| || || | || || | || ||| Sbjct 1873387 CTGAAGAAGATACCCTCGACGGCGGCGAAGGCGATCAGGCGCTGGGCAAAGGTGG-ACTT 1873329 Query 42235 ---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTC 42268 ||| |||||||| | ||||||||||||||| Sbjct 1873328 CCGGTCGGTAATCCACTTCAGGGCCCAATCGGCCTTC 1873292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138361076000