Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 163 4e-35 seq15 149 9e-31 >seq1 Length=3626568 Score = 163 bits (180), Expect = 4e-35 Identities = 310/451 (69%), Gaps = 23/451 (5%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||| | || ||||||||||| ||||| |||||||| || || ||| ||||||| Sbjct 1873350 CTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCGTCCATCTTC 1873409 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||| ||||||||||| || |||||||| ||||| | |||||| | || || || Sbjct 1873410 TGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGC 1873469 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCG 125604 ||||||||||| ||| ||||| ||| || ||||| ||||| || | | |||| Sbjct 1873470 GACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCTGAAGAACCGCCCG 1873529 Query 125605 AG--TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662 || | |||| || | ||||||||| |||||||||||| ||| || Sbjct 1873530 AGCAAGGAGAT----CGTCCAGAAGGTCATC---------ACCGATGCCGTGGAGATCGA 1873576 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAAT 125722 || ||||| || ||||| |||| || | | || | ||||||||| ||| || || Sbjct 1873577 GCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCAACCTCAT 1873636 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAA 125779 | ||||||| ||||| || || || || || || || | ||| || ||| Sbjct 1873637 GAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---CGTCGCCCTCGGCAACGACAA 1873693 Query 125780 GATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGAC 125839 | | ||| | ||| || ||||| || |||||| | ||| || || | || ||||| Sbjct 1873694 GGTCTACCGCTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGAC 1873753 Query 125840 CAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||||| ||||||||| ||| |||||||| Sbjct 1873754 CAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 1873784 Score = 125 bits (138), Expect = 1e-23 Identities = 206/292 (71%), Gaps = 10/292 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||| | || ||||| ||||| | ||||||| |||| ||| Sbjct 1872884 ATCTGGCAGATGTACAAGAAGCACGAAGCATCCTTCTGGACCGCCGAAGAGATCGACCTG 1872943 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 |||||||| || |||| ||| | | | | || || ||| ||||| ||| | Sbjct 1872944 TCCAAGGATCTCCACGACTGGAACAACAGACTCACCGA---TGA-CGAGAAGTTCTTTGT 1872999 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 |||||||| | |||||||| |||| || ||||| || |||||||| || || || || Sbjct 1873000 TTCGCACATCCTTGCCTTCTTCGCCGCGTCTGATGGCATTGTCAACGAGAACCTTGTCGA 1873059 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 || ||| | || | ||||| |||| | ||||| ||||| |||||||||| Sbjct 1873060 G-CGGTTCAGTGGCGAAGTCCAGATTCCCGAGGCGCGATGCTTCTACGGTTTCCAAATCA 1873118 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||| |||||| | ||||| || | |||||| || || |||| |||||| Sbjct 1873119 TGATGGAGAACATCCACTCCGAGACCTACTCTCTGCTCATCGACACGTACAT 1873170 >seq15 Length=644973 Score = 149 bits (164), Expect = 9e-31 Identities = 333/495 (67%), Gaps = 4/495 (1%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||| ||| ||||| ||||| || ||||| || || | ||| |||||||||| || | Sbjct 161076 GATATGTTGATCAGGGTGGCAACAAGCGGCCTGGTGCCTTTGCCATCTACTTGGAGCCGT 161017 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| |||| ||||| || || | || | || || ||| || || ||| | Sbjct 161016 GGCACTCGGATGTTTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGATCC 160957 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | ||| | || ||| || ||| | || || | ||||||||||| ||| | Sbjct 160956 GTGCTCGCGACCTCTTCCTTGCTCTTTGGATTCCCGACCTTTTCATGAAGCGTGTCGAGA 160897 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| | |||| || |||||||| || || || || || ||||| || | Sbjct 160896 AGAACGGCGAGTGGACTCTCATGTGCCCGAACGAGTGCCCTGGCCTAGCCGATGTCTACG 160837 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATAC-GTGAGACGA 97163 | || ||||| |||||| |||| | |||||| |||||||| | || ||| | Sbjct 160836 GTGATGAGTTCGAGGCCTTGTACGAGAAGTACGAGGCTGAGGGCCGCGGCCGTCAGAAG- 160778 Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| | || | |||| |||||| | ||||| | |||||| |||||||| | || Sbjct 160777 GTCAAGGCCC-AGAAGCTGTGGTATGCCATTCTCGAAGCTCAGACCGAGACTGGCAACCC 160719 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | ||| |||||||||||| | || ||||| |||||||| || | |||||||| Sbjct 160718 CTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCAT 160659 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 |||| || |||||||| |||||||| |||||| | | || || ||| || || Sbjct 160658 TCGCAGCTCAAACCTGTGCACTGAAATTGTGGAGTACTCGGCCCCCGATGAGGTCGCTGT 160599 Query 97343 TTGCGTTCTGGCATC 97357 ||| ||||||| Sbjct 160598 CTGCAACTTGGCATC 160584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058273676000