Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-18 seq47 104 4e-18 >seq1 Length=3626568 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| ||| |||||| || |||||||| || ||||||||||| |||| Sbjct 1437535 CGCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 1437477 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| || || |||||||| ||||||||| |||||| Sbjct 1437476 TCCGACGTCTCGCCCGCCGTGGTGGTGTCAAGCGTATCTCTG 1437435 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| || | ||| | ||| ||||||| || ||| |||| ||| | Sbjct 1437369 TGATCTACGAAGAGACGCGGGGTGTCCTCAAGTCCTTCCTCGAGGGCGTCATCCGTGACG 1437310 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| |||| ||||||| | Sbjct 1437309 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTCACCTCGCTGGACGTCGTCTACG 1437250 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || | || ||||| | | || ||||| || ||||| Sbjct 1437249 CGCTCAAGAGACAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 1437206 >seq47 Length=1462733 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 20613 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 20555 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || ||||||||||| ||||||||| |||| Sbjct 20554 CCGGCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTC 20516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075108569300