Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15 241 2e-58 >seq15 Length=644973 Score = 241 bits (266), Expect = 2e-58 Identities = 600/902 (67%), Gaps = 18/902 (2%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| || || | |||| | | | ||||| || || | ||| ||||| | | | Sbjct 160824 TCGAACTCATCACCGTAGACATCGGCTAGGCCAGGGCACTCGTTCGGGCACATGAGAGTC 160883 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 ||||| |||| | || || || ||||| || || || |||||||||||||| | || Sbjct 160884 CACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAAAGAGCAAGGAAG 160943 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 || || | | | ||||| || || ||||| ||||| |||||| | | | Sbjct 160944 AGGTCGCGAGCACGGATCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAA 161003 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | ||| || |||||||| |||||||| ||||| | | |||||||| ||||| || ||| Sbjct 161004 ACATCCGAGTGCCACGGCTCCAAGTAGATGGCAAAGGCACCAGGCCGCTTGTTGCCACCC 161063 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | ||||| |||||||| || | || | | ||| || | ||||| || || Sbjct 161064 TGATCAACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGGACGATACCATTGGAC 161123 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 | || || ||||||| ||| || ||| ||||||||||| | || | ||| Sbjct 161124 GTTCCGTTAGTACCGGCGATGTACGAGCCAGTGGCACGAATACGATGGATATTCAAACCG 161183 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || ||||| || ||||| | || || ||| | || || ||||||||||| Sbjct 161184 ATACCACCGGCCATCTTGGAGATCATAGCACAAGTTTTCAGGGTATCGTAGATACCCTCG 161243 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 ||||||||||| |||| | | || || ||| || | || || || || Sbjct 161244 ATGCTATCATCCTTCATATCGACAAGGAAGCAGGATGAAAGCTGCGCCTGAGGTGTACCA 161303 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 || || || | ||| || || || || || || |||| |||| | || ||||| ||| Sbjct 161304 GCGTTGAAAAGGGTTGGGGAGGCATGAGTGAAGTATTTGCCAGACATGAGGTTGTAGGTC 161363 Query 63678 TCAAT-AGCTGAGTCTATATCCCATTGATGA------ATTCCTACTGCGACACGCATTAA 63730 ||||| | || ||| || ||||| | | || || || || |||||||| | Sbjct 161364 TCAATGACCT---TCTCTA---CATTG-TCACCCCAGATACCGACAGCAACACGCATAAT 161416 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||| ||||| || ||||||||| | | |||| | |||||| ||||| Sbjct 161417 CATGTGCTGCGGTCTCTCGACGATCTTGCCATCGAGCTTCAGAAGGTAGGACCGCTCCAA 161476 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 ||| || || || || || | ||| |||||||| || || | |||| | |||| || Sbjct 161477 AGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCATAGACAATAGCAGAGTCGAA 161536 Query 63851 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAATGTT 63909 | ||||| | | | |||| | | ||| | || | ||| || || || | Sbjct 161537 ATCCTCCTTGTGTCTCATAAC-ACAATCATACGTCTCCTGGGCAATCATGGGGGATGCCT 161595 Query 63910 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttt 63968 | |||||| | || || ||||||| | | | || | || || | || | || Sbjct 161596 TGCCATTTCTGGGGTTGACATAGTGGTAGAGGTCACTGACGAC-AGACGACCATTGCTTC 161654 Query 63969 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGA 64028 ||||| | |||||| || ||||| ||||| || | ||||| || |||||||| || || Sbjct 161655 TTTGTCTGCTTGTGGAGGTTTGACACGGCGATACGTGCGGCGAGGATGGCATAGTCAGGG 161714 Query 64029 TG 64030 || Sbjct 161715 TG 161716 Score = 105 bits (116), Expect = 8e-18 Identities = 354/548 (65%), Gaps = 15/548 (3%) Strand=Plus/Plus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||| | |||||||| ||||| || || | | ||||| || |||||||| Sbjct 159660 TCCTGGTCGACGGTGAATTGGATGGGGTTGGCGGCAGCCTGAGTACGGAGGTAGTACATG 159719 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 ||||| || |||||||| |||| || || ||||| || || | ||| | Sbjct 159720 CCCGTCTTGAGACCGAGCTTCCAACCAGTGAAGTGCATGCTGGTGATCTTGCCCATGGTA 159779 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 || || || || || |||| || ||| || || ||||| || || | ||| ||| Sbjct 159780 GGCTCACGCATGTGAATGTTCAGCGACTGAGACTGGTCAATGAATGCGCCACGGTCGGCA 159839 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222 ||||| | | || |||| || | ||||||||| | || || |||| ||| || Sbjct 159840 GCCATCTGGACGACCGTCCGCTGAGAAATTTCCCAGACTGTCTTGTAAAGAGACTTGATG 159899 Query 62223 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 ||| | |||| ||| | | ||||||||||| || || || || || || | ||||| Sbjct 159900 TCTGCGGGAACGTTGGGAATGTTCTGAATGGAGCCGCCTTCGGCAATGATGCGGTTCTTC 159959 Query 62280 ATCTCATCATTCCATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 62334 || |||| ||| | || | | | ||| | | || || || || | Sbjct 159960 ATGCCATCGGACCAAAGACCCATATCCACGAGGT-----CCTTGAGCAGCCAAGGGTTGA 160014 Query 62335 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62394 | || || || || |||| | || | |||| ||| || || ||| || || || | Sbjct 160015 CGACCTGGAACTCGCCAGCAAGGACACGGCGAGAGTAGATGTTGGAGGTGTAAGGCTCGA 160074 Query 62395 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62454 | || || || |||| || || | || ||||| |||||||| |||||||| | Sbjct 160075 AACATTCGTTGTTGCCCAGGATCTGGGAGGTACTGGCAGTGGGCATAGGGGCCACCAACA 160134 Query 62455 AACTATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62513 |||| |||| | ||| | || | |||| | || || || | |||||| | |||||| Sbjct 160135 AACTGTTTCGCACACCATTCTGCT-TGATCTGGTCCTTCAGCGTTTCCCAGTCCCAAAGG 160193 Query 62514 TCCGACGG 62521 || ||||| Sbjct 160194 TCGGACGG 160201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946421316000