Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 255 7e-63 >seq15 Length=644973 Score = 255 bits (282), Expect = 7e-63 Identities = 603/902 (67%), Gaps = 18/902 (2%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| || || | |||| | | || ||||| || || | ||| ||||| | | | Sbjct 160824 TCGAACTCATCACCGTAGACATCGGCTAGGCCAGGGCACTCGTTCGGGCACATGAGAGTC 160883 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 ||||| |||| | || || || ||||| || || || |||||||||||||| | || Sbjct 160884 CACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAAAGAGCAAGGAAG 160943 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || || | | | ||||| || || ||||| ||||| |||||| | | | Sbjct 160944 AGGTCGCGAGCACGGATCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAA 161003 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | ||| || |||||||| |||||||| ||||| | | |||||||| ||||| || ||| Sbjct 161004 ACATCCGAGTGCCACGGCTCCAAGTAGATGGCAAAGGCACCAGGCCGCTTGTTGCCACCC 161063 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 ||||| | ||||| |||||||| || | || | | ||| || | ||||||||||| Sbjct 161064 TGATCAACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGGACGATACCATTGGAC 161123 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 || || || || || | ||| || ||| ||||||||||| | || | ||| Sbjct 161124 GTTCCGTTAGTACCGGCGATGTACGAGCCAGTGGCACGAATACGATGGATATTCAAACCG 161183 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || ||||| || ||||| | || || ||| | ||||| ||||| ||||| Sbjct 161184 ATACCACCGGCCATCTTGGAGATCATAGCACAAGTTTTCAGGGTATCGTAGATACCCTCG 161243 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63472 || ||||||||| |||| | | || || ||| || | || || || || Sbjct 161244 ATGCTATCATCCTTCATATCGACAAGGAAGCAGGATGAAAGCTGCGCCTGAGGTGTACCA 161303 Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 || || || | ||| || || || ||||| || |||| |||| | || ||||| ||| Sbjct 161304 GCGTTGAAAAGGGTTGGGGAGGCATGAGTGAAGTATTTGCCAGACATGAGGTTGTAGGTC 161363 Query 63533 TCAAT-AGCTGAGTCTATATCCCATTGATGA------ATTCCTACTGCGACACGCATTAA 63585 ||||| | || ||| || ||||| | | || || || || |||||||| | Sbjct 161364 TCAATGACCT---TCTCTA---CATTG-TCACCCCAGATACCGACAGCAACACGCATAAT 161416 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| ||||| || ||||||||| | | |||| | |||||| ||||| Sbjct 161417 CATGTGCTGCGGTCTCTCGACGATCTTGCCATCGAGCTTCAGAAGGTAGGACCGCTCCAA 161476 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||| || || || || || | ||| |||||||| || || | |||| | |||| || Sbjct 161477 AGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCATAGACAATAGCAGAGTCGAA 161536 Query 63706 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACT-TGAAATAATAGGAAAATGTT 63764 | ||||| | | | |||| ||| ||| | || | ||| || || | | Sbjct 161537 ATCCTCCTTGTGTCTCATAAC-ACAATCATACGTCTCCTGGGCAATCATGGGGGATGCCT 161595 Query 63765 TCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttt 63823 | |||||| | || |||||||||| | | | || | || || | || | || Sbjct 161596 TGCCATTTCTGGGGTTGACATAGTGGTAGAGGTCACTGACGAC-AGACGACCATTGCTTC 161654 Query 63824 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 63883 ||||| | ||||| || ||||| ||||| || | ||||| || |||||||| || || Sbjct 161655 TTTGTCTGCTTGTGGAGGTTTGACACGGCGATACGTGCGGCGAGGATGGCATAGTCAGGG 161714 Query 63884 TG 63885 || Sbjct 161715 TG 161716 Score = 105 bits (116), Expect = 8e-18 Identities = 354/548 (65%), Gaps = 15/548 (3%) Strand=Plus/Plus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||| | |||||||| ||||| || || | | ||||| || |||||||| Sbjct 159660 TCCTGGTCGACGGTGAATTGGATGGGGTTGGCGGCAGCCTGAGTACGGAGGTAGTACATG 159719 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957 ||||| || |||||||| |||| || || ||||| || || | ||| | Sbjct 159720 CCCGTCTTGAGACCGAGCTTCCAACCAGTGAAGTGCATGCTGGTGATCTTGCCCATGGTA 159779 Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 || || || || || |||| || ||| || || ||||| || || | ||| ||| Sbjct 159780 GGCTCACGCATGTGAATGTTCAGCGACTGAGACTGGTCAATGAATGCGCCACGGTCGGCA 159839 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077 ||||| | | | |||| || | ||||||||| | || || |||| ||| || Sbjct 159840 GCCATCTGGACGACCGTCCGCTGAGAAATTTCCCAGACTGTCTTGTAAAGAGACTTGATG 159899 Query 62078 TCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 ||| | |||| ||| | | ||||||||||| || || || || || || | ||||| Sbjct 159900 TCTGCGGGAACGTTGGGAATGTTCTGAATGGAGCCGCCTTCGGCAATGATGCGGTTCTTC 159959 Query 62135 ATCTCATCATTCCATA-----ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 62189 || |||| ||| | || | | | ||| | | || || || || | Sbjct 159960 ATGCCATCGGACCAAAGACCCATATCCACGAGGT-----CCTTGAGCAGCCAAGGGTTGA 160014 Query 62190 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62249 | || || || || |||| | || | |||| ||| || || ||| || || || | Sbjct 160015 CGACCTGGAACTCGCCAGCAAGGACACGGCGAGAGTAGATGTTGGAGGTGTAAGGCTCGA 160074 Query 62250 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62309 | | || || || |||| || || | || ||||| |||||||| |||||||| | Sbjct 160075 AACATTCGTTGTTGCCCAGGATCTGGGAGGTACTGGCAGTGGGCATAGGGGCCACCAACA 160134 Query 62310 AACTATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368 |||| |||| | ||| | || | |||| | || || || | |||||| | |||||| Sbjct 160135 AACTGTTTCGCACACCATTCTGCT-TGATCTGGTCCTTCAGCGTTTCCCAGTCCCAAAGG 160193 Query 62369 TCCGACGG 62376 || ||||| Sbjct 160194 TCGGACGG 160201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631207960000