Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq21 105 6e-18 seq47 86.0 5e-12 >seq21 Length=521316 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || || |||||||| Sbjct 163371 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 163312 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| |||||| ||||| || || || || || |||||| Sbjct 163311 GATACCATCGACAACGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCAA 163252 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || ||||| || || || || || | || || | |||| ||||| Sbjct 163251 CAGCGACTTATCTTCGCCGGTAAGCAGTTGGAGGACGGCCGAACGCTAAGCGACTACAAC 163192 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || ||||| ||||| || Sbjct 163191 ATCCAGAAGGAATCGACGCTGCA 163169 >seq47 Length=1462733 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 25001 GCAAATATTT--GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||| || || ||||| |||| || || ||||||| |||| ||||||||||| Sbjct 1313598 GCAAATAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 1313657 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| || || || || || ||| Sbjct 1313658 GACACCATCGA--CAATGTCAAGTCGAAGATTCA-GGACAAGGAGGGCATCCCTCCGGAC 1313714 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| |||||||| || | || |||| || || | ||| ||| Sbjct 1313715 CAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTAC 1313774 Query 25176 AATATTCAAAA 25186 || || || || Sbjct 1313775 AACATCCAGAA 1313785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327471881500