Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq21 179 7e-40 seq72 176 8e-39 seq1 174 3e-38 seq47 143 5e-29 >seq21 Length=521316 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || ||| ||| || |||||||| || || ||| Sbjct 163653 CCACCACGCAGACGGAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAG 163712 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||| | ||| |||||||| ||| Sbjct 163713 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGCGGA 163772 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||||| ||||||| ||||| ||||| | || || || Sbjct 163773 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACC 163832 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || |||||||| ||||||||||| |||||||| Sbjct 163833 TCCAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAGATCTGCAT 163879 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || |||||||| || || ||||| || ||||| Sbjct 163373 CCACCGCGGAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 163432 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || |||||||| ||| Sbjct 163433 AGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 163492 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||||| ||||||| || |||||||| | || || || Sbjct 163493 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACC 163552 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||| || ||||| || ||||||||||||| Sbjct 163553 TCGAGGGTGATCGTCTTTCCGGTCAGGGTCTTGACGA 163589 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || ||| ||| || |||||||| || ||| Sbjct 162917 CCACCACGGAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 162976 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || ||||| ||||| | || || || || ||| Sbjct 162977 AACGTACGACCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGATCCGGGGGA 163036 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| ||| || ||||||||||| | ||| || || Sbjct 163037 ATGCCTTCCTTGTCCTGAATCTTGCTCTTCACATTGTCGATGGTGTCCGATGACTCAACC 163096 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || ||||| || ||||||||||| |||||||| Sbjct 163097 TCCAGCGTGATGGTCTTCCCCGTAAGAGTCTTGACGAAGATCTGCAT 163143 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| ||||| || || || |||||||| || ||| Sbjct 163145 CCACCACGGAGCCGGAGAACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTT 163204 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||| |||||||| || |||| ||||||||||| || Sbjct 163205 AGCGTTCGGCCGTCCTCCAACTGCTTACCGGCGAAGATAAGTCGCTGTTGGTCGGGCGGG 163264 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || |||||||| || || ||||| ||| ||| |||||||| || | || || || Sbjct 163265 ATACCCTCCTTGTCCTGGAT-TTTGCTCTTCACGTTGTCGATGGTATCCGACGACTCGAC 163323 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||||||||| |||||||| Sbjct 163324 CTCAAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 163371 >seq72 Length=40277 Score = 176 bits (194), Expect = 8e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||||| |||| ||| || ||| ||| || |||||||| || || ||| Sbjct 18653 CCTCCGCGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 18712 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || || || | |||||| |||||||| || || | || ||||| || || Sbjct 18713 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGG 18772 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| |||||| ||||||||||| ||| || || || Sbjct 18773 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTC-GCTCGACTCCAC 18831 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 18832 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 18882 >seq1 Length=3626568 Score = 174 bits (192), Expect = 3e-38 Identities = 321/468 (69%), Gaps = 2/468 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||| |||||||||||||| || || |||||||||||||| |||||| | Sbjct 1873802 CATGACGCCGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 1873743 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||| || ||| |||||||||||| |||||||| || || | |||| || || Sbjct 1873742 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGCGGTAGACCTTGTCGTTGCC 1873683 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || || | |||||| || ||||||||||||||||| |||| |||| | ||| Sbjct 1873682 GAGGGCGACGAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTT 1873623 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || | |||||| | ||| ||| | ||| |||| ||| | | || || Sbjct 1873622 CATGCCGAGCAGGGCGCAGGGCAGGGCCTCGGTGAGGAACTCCTGCTCGATCTCCACGGC 1873563 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 || || || ||| || | || | | | ||||| || | ||| |||| Sbjct 1873562 ATCGGTGATGACCTTCTGGACGATCTCCTTGCTCGGGCGGTTCTTCAGGTGCGAGAACAG 1873503 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 || | || | ||| |||||||||||||| ||||| ||||||||| || Sbjct 1873502 CAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGT 1873443 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGAGA 10353 ||| |||||||| || || || || ||||||||| |||| ||| ||| | ||| || Sbjct 1873442 CAGGCCGGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGACGC-GAAGGCGCCGCTGA 1873384 Query 10354 ACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 | | | |||||| ||| | |||||| ||||||| || |||| Sbjct 1873383 AGAAGATACCCTCGACGGCGGCGAAGGCGATCAGGCGCTGGGCAAAGG 1873336 >seq47 Length=1462733 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 1313785 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 1313726 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || || ||||| |||||||| |||||||| | |||||| ||| Sbjct 1313725 AGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCG 1313666 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 1313665 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1313607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621247972000