Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15 349 7e-91 seq1 309 6e-79 >seq15 Length=644973 Score = 349 bits (386), Expect = 7e-91 Identities = 1034/1573 (66%), Gaps = 41/1573 (3%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAG-G 243934 ||| || ||||| |||||| | ||| | |||| || || || ||||| || || | Sbjct 159797 GTTCAGCGACTGAGACTGGTCAATGAATG-CGCCACGGTCGGCAGCCATCTGGACGACCG 159855 Query 243935 TCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCT 243994 ||| |||||| || || | | |||||||| | | ||||| || || |||||| | Sbjct 159856 TCCG-CTGAGAAATTTCCCAGACTGTCTTGTAAAGAGACTTGATGT-CTGCGGGAACGTT 159913 Query 243995 TCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCA 244053 || ||||||| | ||||| | | | |||| || | |||| |||| ||| Sbjct 159914 GGGAATGTTCTGAATGGAGCCGCCTTCGGCAATGATGCGGTTCTTCATGCCATCGGACCA 159973 Query 244054 CAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGA 244113 || |||| | | || ||| || ||| ||| || ||||| ||||| || | Sbjct 159974 AAGACCCATATCCACGAGGTCCTTGAGCAGCCAAGGGTTGACGACCTGGAACTCGCCAGC 160033 Query 244114 CAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAG 244173 || || ||||| ||||| |||| | || ||||||| | || |||||||||| Sbjct 160034 AAGGACACGGCGAGAGTAGATGTTGGAGGTGTAAGGCTCGAAACATTCGTTGTTGCCCAG 160093 Query 244174 TATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTG 244233 ||||| | || || ||||| ||||| || | ||||| || |||||| | ||| || | Sbjct 160094 GATCTGGGAGGTACTGGCAGTGGGCATAGGGGCCACCAACAAACTGTTTCGCACACCATT 160153 Query 244234 CCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTT 244293 | || ||| || | ||| | ||||||||| | | | || | ||| Sbjct 160154 CTGCTTGATCTGGTCCTTCAGCGTTTCCCAGTCCCAAAGGTCGGACGG-------CGT-- 160204 Query 244294 GAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGG 244353 || ||||||||| |||| || | |||| ||| || ||| ||||| || | Sbjct 160205 GACATTCCACATGTCGTACTGGAGTATGCCCTGTGAGACAGGAGAGCCTTCGTAAGTGGA 160264 Query 244354 GTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GTCGAGGGCGGCGTAGTAGATGG 244412 ||| || || || || || | | || | | ||| ||| | |||| |||||| | Sbjct 160265 GTATGGGCCCTCCACCTTAGCAATTTCCGAGGACGCTGTCAAGG-CAGCGTGGTAGATTG 160323 Query 244413 TCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATC 244471 ||||||||||| |||||||| | | |||| || || | ||| || |||| | | Sbjct 160324 TCTCGAAGATCTGCTTGTTCAGCTGTCTAGCCTCTGGCG-ACTCGAAAGGCATGCGAAGC 160382 Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531 || |||| ||| || || ||||| || || | ||||||||| | ||||||| ||||| Sbjct 160383 GCCAAGAAGGTGTCAGCAAGACCCTGAACACCTAGGCCGATGGGACGGTGTCGCATGTTG 160442 Query 244532 GAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCG 244590 | || || || |||| || ||||| |||| ||||||| | |||||| |||||| | Sbjct 160443 CTGTTGCGTGCCTCCGGG-ACAGGGTAGTAGTTCACGTCGATGATCTTGTTCAGGTTGTG 160501 Query 244591 GGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGC 244650 | || | || || ||| ||| ||| |||||||| || | ||| Sbjct 160502 GACGACGACCTGGGTAACTTCGTGAAGCTTCTGGAAGTCGTATACGC------CTTCG-- 160553 Query 244651 GATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTC 244710 | || ||| | || | || | | | || | || ||| ||||||||| || ||||| Sbjct 160554 --TTGTAGTCCACGAAAGATGGTAGCGCGAGA-GATG-CCAAGTTGCAGACAGCGACCTC 160609 Query 244711 CTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAG 244770 || | | | ||||| ||||| || ||||| ||||| || |||||||| || Sbjct 160610 ATCGGGGGCCGAGTACTCCACAATTTCAGTGCACAGGTTTGAGCTGCGAATGGTGCCGAG 160669 Query 244771 GTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGT 244830 || || || ||| |||| ||||||| |||||||||||||||||||| || || Sbjct 160670 GTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCAGT 160729 Query 244831 CTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGC 244890 |||| ||| || |||| | | | ||| || | | ||||||||| || || | Sbjct 160730 CTCGGTCTGAGCTTCGAGAATGGCATACCACAGCTTCTGGGCCTTGACCTTCTGACGGCC 160789 Query 244891 CTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTC 244950 |||||| |||||||| ||||| |||||||||||| || |||| ||| | Sbjct 160790 GCGGCCCTCAGCCTCGTACTTCTCGTACAAGGCCTCGAACTCATCACCGTAGACATCGGC 160849 Query 244951 TAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTG 245010 |||||| |||||| ||||||||||||| ||||||||||| | || ||| | || Sbjct 160850 TAGGCCAGGGCACTCGTTCGGGCACATGAGAGTCCACTCGCCGTTCTTCTCGACACGCTT 160909 Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||| |||||||| ||||| || || |||||||||| | | | ||| || Sbjct 160910 CATGAAAAGGTCGGGAATCCAAAGAGCAAGGAAGAGGTCGCGAGCACGGATCTCCTCTTT 160969 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || |||||| | || || | || || || || || |||||| ||||||| ||| Sbjct 160970 ACCGTGGTTCTTACGGAGATCAAGGAACTCGAAAACATCCGAGTGCCACGGCTCCAAGTA 161029 Query 245131 GACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTT 245190 || || | ||| || |||||||||||||| ||||| || || ||| || ||| Sbjct 161030 GATGGCAAAGGCACCAGGCCGCTTGTTGCCACCCTGATCAACATATCTCGCGGTGTTGTT 161089 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||||| || || |||| || || || || || ||||| || || |||||| | Sbjct 161090 GAAGACACGGAGCATAGGGACGATACCATTGGACGTTCCGTTAGTACCGGCGATGTACGA 161149 Query 245251 GCCCTTGCCCCTGAGGTTGCTGATGGA----CATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 ||| || | | | | | |||||| || || | || ||||| |||||||| Sbjct 161150 GCCAGTGGCAC---GAATAC-GATGGATATTCAAACCGATACCACCGGCCATCTTGGAGA 161205 Query 245307 TGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGA 245366 | | || || | || | ||| || || ||||| ||||| || |||||| | || Sbjct 161206 TCATAGCACAAGTTTTCAGGGTATCGTAGATACCCTCGATGCTATCATCCTTCATATCGA 161265 Query 245367 GCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGG 245426 || |||||||| || ||||| | || || | | | |||||| || || ||| || Sbjct 161266 CAAGGAAGCAGGATGAAAGCTGCGCCTGAGGTGTACCAGCGTTGAAAAGGGTTGGGGAGG 161325 Query 245427 CGTGGGTAAAGTA 245439 | || || ||||| Sbjct 161326 CATGAGTGAAGTA 161338 >seq1 Length=3626568 Score = 309 bits (342), Expect = 6e-79 Identities = 376/503 (75%), Gaps = 11/503 (2%) Strand=Plus/Plus Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGC 42705 |||||| || ||||| || || ||||| | | || || | | || || | | || | | Sbjct 1873292 GAAGGCCGATTGGGCCCTGAAGTGGATT-ACCGACCGGAAGTCCACCTTTGCCCAGCGCC 1873350 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 || | ||||| ||||||||||||| ||||||||| ||||||||||| |||||||||| Sbjct 1873351 TGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCGTCCATCTTCT 1873410 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| || | ||||||||| || |||||||| ||||| |||||| | | Sbjct 1873411 GGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGCG 1873470 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 ||||||| ||||| | ||||| |||||||| ||||||||| ||||| | | || || Sbjct 1873471 ACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCG---CACCTGAAGAAC-CGC 1873526 Query 42886 CCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || | |||||| |||| | ||||||| || ||||||||||||||| |||||||| Sbjct 1873527 CCGAGCAAGGAGATCGTCCAGAAGGTCATCACCGATGCCGTGGAGATCGAGCAGGAGTTC 1873586 Query 42945 CTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTAC 43004 ||||| || | |||||| ||||| ||||||||||| | |||||||| ||||| Sbjct 1873587 CTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCAACCTCATGAAGCAGTAC 1873646 Query 43005 ATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTCAGCCGCCTCTACAACA 43062 ||| ||| ||||||||||| || || || ||| | || | | ||||| | Sbjct 1873647 ATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCC--CTCGGCAACGACAAGGTCTACCGCT 1873704 Query 43063 CGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCG 43122 | | |||||||||||| ||||||||||||||| | | |||||||||||||| |||| Sbjct 1873705 CCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCG 1873764 Query 43123 AGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||| ||| |||||| Sbjct 1873765 AGAAGCGCGTCGGCGAGTACCAG 1873787 Score = 125 bits (138), Expect = 1e-23 Identities = 232/336 (69%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGG-CGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| |||||||||||| || || ||| |||||||||||| ||||| ||||| Sbjct 1872884 ATCTGGCAGATGTACAAGAAGCACGAAGCA-TCCTTCTGGACCGCCGAAGAGATCGACCT 1872942 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGTC---ACTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 | ||||||| || |||| | ||| | || |||| ||||| || | Sbjct 1872943 GTCCAAGGATCTCCACGACTGGAACAACAGACTCACCGATGACGAGAAGTTCTTTGTTTC 1873002 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||||||||| ||||| ||||| ||||| |||||||| | | | Sbjct 1873003 GCACATCCTTGCCTTCTTCGCCGCGTCTGATGGCATTGTCAACGAGAACCTTGTCGAGCG 1873062 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||||| || || ||| |||||||| ||||||||||| ||||| || || Sbjct 1873063 GTTCAGTGGCGAAGTCCAGATTCCCGAGGCGCGATGCTTCTACGGTTTCCAAATCATGAT 1873122 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | ||||||| ||||||||||| ||| || Sbjct 1873123 GGAGAACATCCACTCCGAGACCTACTC---TCTGCTCATCGACACGTACATCAAGGAGCC 1873179 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 || | | || | | || ||||| ||||| || || Sbjct 1873180 CGCCCAACGGACCCACCTCTTCAATGCCATTGACAC 1873215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338019576000