Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq21 143 6e-29 seq72 131 4e-25 seq47 98.7 2e-15 seq1 95.1 3e-14 >seq21 Length=521316 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| ||| || ||||| || |||||| Sbjct 163145 CCACCACGGAGCCGGAGAACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTT 163204 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || ||||| || || || || || |||||||| || |||||||| ||| Sbjct 163205 AGCGTTCGGCCGTCCTCCAACTGCTTACCGGCGAAGATAAGTCGCTGTTGGTCGGGCGGG 163264 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || ||||||||||| ||| |||||||| || || | ||| ||| || || Sbjct 163265 ATACCCTCCTTGTCCTGGATTTT-GCTCTTCACGTTGTCGATGGTATCCGACGACTCGAC 163323 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 163324 CTCAAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 163371 Score = 118 bits (130), Expect = 3e-21 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || | || | ||||| || || ||||| || |||||| Sbjct 162914 TGCCCACCACGGAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 162973 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| || ||||| || | || || || ||||| || |||||||| ||| || Sbjct 162974 CTCAACGTACGACCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGA---TCC 163030 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGA 288419 ||| || ||||| || ||||| || || ||| ||||| || || || | || || Sbjct 163031 GGGGGAATGCCTTCCTTGTCCTGAATCTT-GCTCTTCACATTGTCGATGGTGTCCGATGA 163089 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| |||||||| || |||||||||||||| |||||||| Sbjct 163090 CTCAACCTCCAGCGTGATGGTCTTCCCCGTAAGAGTCTTGACGAAGATCTGCAT 163143 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || |||| ||||| || || ||||| || |||| Sbjct 163649 CATG-CCACCACGCAGACGGAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGT 163707 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| || || || | || || || || ||||| ||||| || || Sbjct 163708 CAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGG 163767 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || |||||||| || | || ||||| || |||| || || | Sbjct 163768 GCGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCCGAGGACT 163827 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || || |||||||||||||| |||||||| Sbjct 163828 CGACCTCCAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAGATCTGCAT 163879 Score = 107 bits (118), Expect = 5e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| ||||| || | ||| || || || || || ||||||| Sbjct 163373 CCACCGCGGAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 163432 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || |||||||||| ||||| || || Sbjct 163433 AGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 163492 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || ||||| || || | ||| || || || Sbjct 163493 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACC 163552 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 ||||| ||||||||||| |||||||| |||||||||| Sbjct 163553 TCGAGGGTGATCGTCTTTCCGGTCAGGGTCTTGACGA 163589 >seq72 Length=40277 Score = 131 bits (144), Expect = 4e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || || | ||||| || || ||||| || ||||| | | Sbjct 18653 CCTCCGCGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 18712 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||| ||||||||||| || ||| Sbjct 18713 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGG 18772 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || |||||||| || ||| || || || || || | |||||||| || || Sbjct 18773 ATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCGCTCGACTCCAC 18831 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| ||||| ||||| || || || ||||||||||| |||||||| || Sbjct 18832 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 18882 >seq47 Length=1462733 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 288278 TGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTG 288337 ||| | | || ||||| || ||||||| ||| || || || || || | || || || | Sbjct 1313793 TGCGTACCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGG 1313734 Query 288338 CGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCA 288397 |||| ||||||||||| || ||||| || || || ||||| || |||| || | Sbjct 1313733 CGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGA 1313674 Query 288398 CGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 | || || || | ||| ||| || || ||||| ||||| ||||| || ||||| |||| Sbjct 1313673 CATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCT 1313614 Query 288458 TGACGAA 288464 | ||||| Sbjct 1313613 TCACGAA 1313607 >seq1 Length=3626568 Score = 95.1 bits (104), Expect = 3e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 || |||| ||||| ||| | |||||||| || || ||||| ||||| || || || | Sbjct 1873612 TGCTCGGCATGAACGCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGC 1873671 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 || || ||||| | || || || ||| || | || ||||||| ||| ||||| Sbjct 1873672 TCGTCGCCCTCGGCAACGACAAGGTCTACCGCTCCACCAACCCCTTCGACTTCATGGAGA 1873731 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || ||||||| || ||||| ||||||||||| ||||| ||| |||| || || Sbjct 1873732 ACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 1873786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652888567800