Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq72 136 4e-27 seq21 122 9e-23 seq47 96.9 4e-15 >seq72 Length=40277 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| || | ||||||||||| || || ||||| || | || ||||| || Sbjct 18665 CGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGGCCG 18724 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||| | || | || ||||||| Sbjct 18725 TCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 18784 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | ||||||||||| ||||| |||| ||||| Sbjct 18785 TCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATA 18844 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || ||||| || ||||| ||||| Sbjct 18845 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 18879 >seq21 Length=521316 Score = 122 bits (134), Expect = 9e-23 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| |||| || || || | || || |||||||| ||| Sbjct 163683 GTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 163742 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 || || ||||| || |||||||||| || | || |||||||||| ||| ||| ||| Sbjct 163743 GCAAAGATGAGACGTTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTTGACTTG 163802 Query 42132 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 | ||| | | | ||||| || || || || | |||||||| |||||||| || || Sbjct 163803 A-CGTTGTCGATAGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGAGT 163861 Query 42191 CTTTACAAAGATTTGCATTTTCACGCCGA 42219 ||| || ||||| ||||| || || ||| Sbjct 163862 CTTGACGAAGATCTGCATCTTGGCGGCGA 163890 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | ||||||||||| || || ||||| || || || || | Sbjct 162928 ACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTACGACC 162987 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||||||||||||||| ||||| |||||||| || | || | || ||||| Sbjct 162988 GTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGATCCGGGGGAATGCCTTCCTT 163047 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || | || | | | | ||||| || || || || | ||||| Sbjct 163048 GTCC-TGAATCTTGCTCTTCACATTGTCGATGGTGTCCGATGACTCAACCTCCAGCGTGA 163106 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| || ||||| || ||||| ||||| Sbjct 163107 TGGTCTTCCCCGTAAGAGTCTTGACGAAGATCTGCAT 163143 Score = 102 bits (112), Expect = 9e-17 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | || || || | || || ||||||||||||||||| Sbjct 163408 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAA 163467 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | |||||||||||||| || | || |||||||||| ||| | |||| |||| || Sbjct 163468 GATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC-TGAATCTTTGACTTGA-CG 163525 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||| || || || |||| ||||| || || || || || ||||| Sbjct 163526 TTGTCAATGGTGTCGGAGGACTCAACCTCGAGGGTGATCGTCTTTCCGGTCAGGGTCTTG 163585 Query 42195 AC 42196 || Sbjct 163586 AC 163587 >seq47 Length=1462733 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || | || || |||||||| || ||||| | Sbjct 1313787 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 1313728 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137 | || ||||||||||| | || | || |||||||||| ||| | || | |||| | Sbjct 1313727 TCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTTCGACTTGACATTG 1313669 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| ||| ||||| |||| |||||||| |||||||| || ||||| || Sbjct 1313668 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 1313609 Query 42198 AA 42199 || Sbjct 1313608 AA 1313607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212120984000