Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq21 98.7 1e-15 seq72 93.3 4e-14 seq47 89.7 5e-13 >seq21 Length=521316 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | || |||||| | || || ||||||||||| ||| | Sbjct 163689 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 163748 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| || ||||||||||| ||||| || || || || || || ||| ||| || Sbjct 163749 ATGAGACGTTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACGTTG 163808 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || || || | || | ||||||||| || | ||| || ||| Sbjct 163809 TCGATAGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACG 163868 Query 64433 AAAATTTGCATTTT 64446 || || ||||| || Sbjct 163869 AAGATCTGCATCTT 163882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | ||||||||| || || |||||||| || | || || |||| Sbjct 163160 AGAACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTTAGCGTTCGGCCGTCC 163219 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| ||||| | || || ||||| |||||||| || || || || || || Sbjct 163220 TCCAACTGCTTACCGGCGAAGATAAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCC 163279 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || ||||| ||| || || | ||||| || || || || || | || | || Sbjct 163280 TGGATTTTGCTCTTCACGTTGTCGATGGTATC--CGACGACTCGACCTCAAGGGTGATGG 163337 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||| || || ||||| || ||||| Sbjct 163338 TCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 163371 >seq72 Length=40277 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | || ||| || |||| || |||||||||||||| || Sbjct 18689 TCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 18748 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| ||||| || || || || || || || || ||| ||| Sbjct 18749 ATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTG 18808 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | | ||||| || | || | |||||||| || | || || ||| Sbjct 18809 TCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 18868 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 18869 AAGATCTGCAT 18879 >seq47 Length=1462733 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||| || | || || |||||||||||||| |||| Sbjct 1313785 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 1313726 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| ||||| || || || || || || || || ||| ||| || Sbjct 1313725 AGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCG 1313666 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || | ||||| || | || | ||||||||| |||| || || |||||| Sbjct 1313665 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 1313606 Query 64436 --ATTTGC 64441 |||||| Sbjct 1313605 CTATTTGC 1313598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644175444000