Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31]
100 sequences; 40,886,495 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 190 2e-43
seq21 120 3e-22
seq72 93.3 4e-14
seq47 87.8 2e-12
>seq1
Length=3626568
Score = 190 bits (210), Expect = 2e-43
Identities = 352/515 (68%), Gaps = 15/515 (3%)
Strand=Plus/Plus
Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129
|||||| | ||| | |||||||| |||||| |||||| ||| || || |||
Sbjct 1873278 CCCTGCATTCGCCGGAAGGCCGATTGGGCCCTGAAGTGGATTACCGACCGGAAGTCCACC 1873337
Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189
| ||| | || ||||||| |||||| ||||||||| |||||||| ||| |||
Sbjct 1873338 TTTGCCCAGCGCCTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTC 1873397
Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249
||| | || || | |||| | || | ||||||||||| || || |||||||
Sbjct 1873398 GCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAG 1873457
Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTA-CAACAC 47305
|| |||||| | ||||| |||||||||||| |||| ||||| || | || || |
Sbjct 1873458 CTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCTG 1873517
Query 47306 TAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTC 47363
||| || | | ||| | ||| | | |||| | |||| |||||
Sbjct 1873518 AAGAACCGCCCGAGCAAGGAGATCGTCCAGAAGGTCATCA---------CCGATGCCGTG 1873568
Query 47364 GCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCG 47423
| || ||| |||||| || ||||||| |||||| | | | || ||||||||
Sbjct 1873569 GAGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCC 1873628
Query 47424 GAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTAT 47483
| | |||| |||||||||| || |||||||||||||||||||| || |
Sbjct 1873629 AACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGCAAC 1873688
Query 47484 CCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGC 47543
|||| | |||| | || || || ||||| || ||| | ||||| ||||||| |||
Sbjct 1873689 GACAAGGTCTACCGCTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGC 1873748
Query 47544 AAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
||||||||||| |||||||||||||||||||| ||
Sbjct 1873749 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 1873783
>seq21
Length=521316
Score = 120 bits (132), Expect = 3e-22
Identities = 142/187 (76%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| | || || ||| || ||||| || |||
Sbjct 163403 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCGAGCTGCTTACCA 163462
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035
||| |||||||||||||||| |||||||| ||||||||||||||| ||| | | || |||
Sbjct 163463 GCGAAGATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC-TGAATCTTTGACTT 163521
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
|| |||| || | |||||| | ||| || |||| ||| | ||| || |||||||| |
Sbjct 163522 GACGTTG-TCAATGGTGTCGGAGGACTCAACCTCGAGGGTGATCGTCTTTCCGGTCAGGG 163580
Query 127095 TTTTTAC 127101
| || ||
Sbjct 163581 TCTTGAC 163587
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| || | ||| || || || || || ||||| ||||
Sbjct 163145 CCACCACGGAGCCGGAGAACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTT 163204
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || || || | ||| || || ||| |||| | |||||| || ||||| ||
Sbjct 163205 AGCGTTCGGCCGTCCTCCAACTGCTTACCGGCGAAGATAAGTCGCTGTTGGTCGGGCGGG 163264
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| |||||| ||| | |||| |||| ||| |||| ||||||
Sbjct 163265 ATACCCTCCTTGTCCTGGATTTTGCTCTTCACGTTG-TCGATGGTATCCGACGACTCGAC 163323
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || ||||||||||| || || || || ||||||||
Sbjct 163324 CTCAAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 163371
Score = 98.7 bits (108), Expect = 9e-16
Identities = 163/234 (70%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
|||||| ||||| || | |||| ||||| || | || ||| || || || |||||
Sbjct 162911 TACTGC-CCACCACGGAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTA 162969
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
|||| || ||| ||| || || ||||| || |||||| | || | |||||||||||
Sbjct 162970 GTCGCTCAACGTACGACCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGATC 163029
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059
|| || ||||| ||||||||| || || ||| | | |||| ||||||||
Sbjct 163030 CGGGGGAATGCCTTCCTTGTCCTGAATCTTGCTCTTCACATTGTCGATGGTGTCCGATGA 163089
Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| || || | || | || || || || ||||| || || || ||||||||
Sbjct 163090 CTCAACCTCCAGCGTGATGGTCTTCCCCGTAAGAGTCTTGACGAAGATCTGCAT 163143
Score = 98.7 bits (108), Expect = 9e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| || | ||||| ||| || ||||| || ||||| |
Sbjct 163688 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 163747
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
||| | || ||||| ||||| || ||||||||||||||| ||| || ||||| |||
Sbjct 163748 GATGAGACGTTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACGTT 163807
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
| |||| ||||||| |||||| || | ||| | || ||||| || ||||| || |
Sbjct 163808 G-TCGATAGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 163866
Query 127101 CAAAAATCTGCAT 127113
| || ||||||||
Sbjct 163867 CGAAGATCTGCAT 163879
>seq72
Length=40277
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| | |||| |||||||| || ||||| ||||||||||||
Sbjct 18725 TCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 18784
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||||| | |||| |||||| | ||| || |||| ||| |
Sbjct 18785 TCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATA 18844
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| ||||| || || || || || || |||||||||
Sbjct 18845 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 18880
>seq47
Length=1462733
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || || ||| | |||| |||||||| || ||||| |||||||||||
Sbjct 1313753 ATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTT 1313694
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| || ||| ||||| | |||| |||||| | ||| || |||| ||| |
Sbjct 1313693 GTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGAT 1313634
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| ||||| ||||| || || || |||
Sbjct 1313633 GGTCTTGCCCGTCAGGGTCTTCACGAAA 1313606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500205624000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |