Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 190 2e-43 seq21 120 3e-22 seq72 93.3 4e-14 seq47 87.8 2e-12 >seq1 Length=3626568 Score = 190 bits (210), Expect = 2e-43 Identities = 352/515 (68%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | ||| | |||||||| |||||| |||||| ||| || || ||| Sbjct 1873278 CCCTGCATTCGCCGGAAGGCCGATTGGGCCCTGAAGTGGATTACCGACCGGAAGTCCACC 1873337 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | ||| | || ||||||| |||||| ||||||||| |||||||| ||| ||| Sbjct 1873338 TTTGCCCAGCGCCTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTC 1873397 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 ||| | || || | |||| | || | ||||||||||| || || ||||||| Sbjct 1873398 GCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAG 1873457 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTA-CAACAC 47305 || |||||| | ||||| |||||||||||| |||| ||||| || | || || | Sbjct 1873458 CTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCTG 1873517 Query 47306 TAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTC 47363 ||| || | | ||| | ||| | | |||| | |||| ||||| Sbjct 1873518 AAGAACCGCCCGAGCAAGGAGATCGTCCAGAAGGTCATCA---------CCGATGCCGTG 1873568 Query 47364 GCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCG 47423 | || ||| |||||| || ||||||| |||||| | | | || |||||||| Sbjct 1873569 GAGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCC 1873628 Query 47424 GAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTAT 47483 | | |||| |||||||||| || |||||||||||||||||||| || | Sbjct 1873629 AACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGCAAC 1873688 Query 47484 CCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGC 47543 |||| | |||| | || || || ||||| || ||| | ||||| ||||||| ||| Sbjct 1873689 GACAAGGTCTACCGCTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGC 1873748 Query 47544 AAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||| |||||||||||||||||||| || Sbjct 1873749 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 1873783 >seq21 Length=521316 Score = 120 bits (132), Expect = 3e-22 Identities = 142/187 (76%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| | || || ||| || ||||| || ||| Sbjct 163403 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCGAGCTGCTTACCA 163462 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 ||| |||||||||||||||| |||||||| ||||||||||||||| ||| | | || ||| Sbjct 163463 GCGAAGATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC-TGAATCTTTGACTT 163521 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| || | |||||| | ||| || |||| ||| | ||| || |||||||| | Sbjct 163522 GACGTTG-TCAATGGTGTCGGAGGACTCAACCTCGAGGGTGATCGTCTTTCCGGTCAGGG 163580 Query 127095 TTTTTAC 127101 | || || Sbjct 163581 TCTTGAC 163587 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| || | ||| || || || || || ||||| |||| Sbjct 163145 CCACCACGGAGCCGGAGAACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTT 163204 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || | ||| || || ||| |||| | |||||| || ||||| || Sbjct 163205 AGCGTTCGGCCGTCCTCCAACTGCTTACCGGCGAAGATAAGTCGCTGTTGGTCGGGCGGG 163264 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| |||||| ||| | |||| |||| ||| |||| |||||| Sbjct 163265 ATACCCTCCTTGTCCTGGATTTTGCTCTTCACGTTG-TCGATGGTATCCGACGACTCGAC 163323 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||||||||| || || || || |||||||| Sbjct 163324 CTCAAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 163371 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| ||||| || | |||| ||||| || | || ||| || || || ||||| Sbjct 162911 TACTGC-CCACCACGGAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTA 162969 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| || ||| ||| || || ||||| || |||||| | || | ||||||||||| Sbjct 162970 GTCGCTCAACGTACGACCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGATC 163029 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 || || ||||| ||||||||| || || ||| | | |||| |||||||| Sbjct 163030 CGGGGGAATGCCTTCCTTGTCCTGAATCTTGCTCTTCACATTGTCGATGGTGTCCGATGA 163089 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || | || | || || || || ||||| || || || |||||||| Sbjct 163090 CTCAACCTCCAGCGTGATGGTCTTCCCCGTAAGAGTCTTGACGAAGATCTGCAT 163143 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| || | ||||| ||| || ||||| || ||||| | Sbjct 163688 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 163747 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | || ||||| ||||| || ||||||||||||||| ||| || ||||| ||| Sbjct 163748 GATGAGACGTTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACGTT 163807 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||||||| |||||| || | ||| | || ||||| || ||||| || | Sbjct 163808 G-TCGATAGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 163866 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 163867 CGAAGATCTGCAT 163879 >seq72 Length=40277 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| | |||| |||||||| || ||||| |||||||||||| Sbjct 18725 TCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 18784 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | ||| || |||| ||| | Sbjct 18785 TCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATA 18844 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || || || ||||||||| Sbjct 18845 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 18880 >seq47 Length=1462733 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || ||| | |||| |||||||| || ||||| ||||||||||| Sbjct 1313753 ATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTT 1313694 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| || ||| ||||| | |||| |||||| | ||| || |||| ||| | Sbjct 1313693 GTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGAT 1313634 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 1313633 GGTCTTGCCCGTCAGGGTCTTCACGAAA 1313606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500205624000