Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 212 6e-50 seq21 143 3e-29 seq72 129 6e-25 seq47 111 2e-19 >seq1 Length=3626568 Score = 212 bits (234), Expect = 6e-50 Identities = 362/516 (70%), Gaps = 12/516 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||||| || ||||| || || || || || || | Sbjct 1873802 CATGACGCCGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 1873743 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 | || ||| | ||| || || |||||||||| | | |||| |||| |||| Sbjct 1873742 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGCGGTAGACCTTGTCGTTGCC 1873683 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || |||||||||| | |||||| |||||||||||||| ||| |||| | || || Sbjct 1873682 GA---GGGCGACGAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGC 1873626 Query 132767 AATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | | | || ||||| |||| ||||| || |||||||| || |||||||| | Sbjct 1873625 GTTCATG-CCGAGCAGGGCGCAG-GGCAGGGCCTCGGTGAGGAACTCCTGCTCGATCTCC 1873568 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 || || ||||||| || | | ||| | || |||||| || | | || ||| | Sbjct 1873567 ACGGCATCGGTGATGACCTTCTGGACGATCTCCTTGCTCGGGCGGTTCTTCAGGTGCGAG 1873508 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 |||| || ||| || |||||| |||| ||||||||| | || ||||| |||||| | Sbjct 1873507 AACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAG 1873448 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || |||| ||||||||| |||||||| || || ||||| || |||| ||||| ||| Sbjct 1873447 AAGGTCAGGCCGGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGACGCGAAGGCGCCG 1873388 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTC 133064 ||||||| ||||||||||| ||||| || | |||||||| | | || |||| |||| Sbjct 1873387 CTGAAGAAGATACCCTCGACGGCGGCGAAGGCGATCAGGCGCTGGGCAAAGGTGGACTTC 1873328 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | || ||||| ||| ||||| |||||||| Sbjct 1873327 -CGGTCGGTAATCCACTTCAGGGCCCAATCGGCCTT 1873293 Score = 122 bits (134), Expect = 9e-23 Identities = 193/276 (70%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || | || ||||| | ||||||||| |||||| || Sbjct 1873168 GTACGTGTCGATGAGCAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 1873109 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| ||||||||| | ||| ||||| | ||| |||||||| || || Sbjct 1873108 ACCGTAGAAGCATCGCGCCTCGGGAATCTGGACTTCGCCACTGAACCGCTCGACAAGGTT 1873049 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| || |||||||| ||||| || | |||| | || Sbjct 1873048 CTCGTTGACAATGCCATCAGACGCGGCGAAGAAGGCAAGGATGTGCGAAACAAAGAACTT 1872989 Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||| | | | | ||||||| | |||||||||||||| | ||| || Sbjct 1872988 CTCGTCATCGGTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGGTCGATCTCTTC 1872929 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || || ||| || |||||||| Sbjct 1872928 GGCGGTCCAGAAGGATGCTTCGTGCTTCTTGTACAT 1872893 >seq21 Length=521316 Score = 143 bits (158), Expect = 3e-29 Identities = 164/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| ||||||||| | || |||||| | | Sbjct 163371 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 163312 Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| ||||||| ||||| ||||| || || |||||| Sbjct 163311 GATACCATCGACAACG--TGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACC 163254 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| || || ||| |||| |||| || || || | |||||||| Sbjct 163253 AACAGCGACTTATCTTCGCCGGTAAGCAGTTGGAGGACGGCCGAACGCTAAGCGACTACA 163194 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| |||||| |||||||||| |||| || || Sbjct 163193 ACATCCAGAAGGAATCGACGCTGCACCTGGTTCTCCG 163157 Score = 136 bits (150), Expect = 4e-27 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| ||||||||| | || |||||| || Sbjct 163882 AAGATGCAGATCTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCC 163823 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | |||| | || ||| |||| ||||| ||||| ||||| |||| Sbjct 163822 TCGGACACTATCGACAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCGCCCGA 163764 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || ||||| | || ||||| ||||| || || | ||||||||| ||||| Sbjct 163763 CCAGCAACGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCTGACTA 163704 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| ||| || || || |||| || ||| || | || ||| Sbjct 163703 CAACATCCAGAAGGAGAGC-ACCCTTCACCTGGTCCTCCGTCTGCGTGGTGGC 163652 Score = 113 bits (124), Expect = 5e-20 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || |||||||| | || || ||| | | Sbjct 163143 ATGCAGATCTTCGTCAAGACTCTTACGGGGAAGACCATCACGCTGGAGGTTGAGTCATCG 163084 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || || | ||||| || || |||||| | || | Sbjct 163083 GACACCATCGACAATG--TGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCCCCGGATC 163026 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| ||| || || |||||||| |||| || || | | |||||||| Sbjct 163025 AGCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGTCGTACGTTGAGCGACTACA 162966 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| ||| || || || ||||| |||||| Sbjct 162965 ACATCCAGAAGGAGAGC-ACCCTCCACTTGGTCCTGCGT 162928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || || || || |||||| |||| || ||| || |||||| | | Sbjct 163589 TCGTCAAGACCCTGACCGGAAAGACGATCACCCTCGAGGTTGAGTCCTCCGACACCATTG 163530 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || ||| || | ||||| ||||| ||||| ||||||| ||||| | Sbjct 163529 ACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGATTG 163471 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || ||||| |||||||||||| || ||| Sbjct 163470 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAG 163411 Query 38433 GA 38434 || Sbjct 163410 GA 163409 >seq72 Length=40277 Score = 129 bits (142), Expect = 6e-25 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| |||| || ||| | | | Sbjct 18879 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC 18820 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| ||||| || || | |||| Sbjct 18819 GACACCATCGACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACC 18762 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| ||||| ||||| || |||| || |||||| ||||||| Sbjct 18761 AGCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCTCGGACTACA 18702 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| ||| || || || |||| ||||| || | || ||| Sbjct 18701 ACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTGCGCCTGCGCGGAGGC 18652 >seq47 Length=1462733 Score = 111 bits (122), Expect = 2e-19 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 38246 GCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||| ||||| || || || |||||||| ||||||||| |||| || ||| | || Sbjct 1313598 GCAAATAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 1313657 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| || || | ||||| Sbjct 1313658 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 1313717 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || || | || |||||| |||||||||| Sbjct 1313718 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 1313777 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 1313778 ATCCAGAAGG 1313787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172174784000