Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq21 131 1e-25 seq72 109 4e-19 seq47 95.1 8e-15 >seq21 Length=521316 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||||| || ||||| ||||| ||||| || ||| | || |||| || Sbjct 163671 ACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 163730 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || ||||||||||| |||| | ||||||||||| Sbjct 163731 AGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGG 163790 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || || ||| || || | ||| ||||| || Sbjct 163791 ATCTTTGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTG 163850 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||||||||| || ||||||||||| || Sbjct 163851 CCCGTGAGAGTCTTGACGAAGATCTGCATCTT 163882 Score = 98.7 bits (108), Expect = 6e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| |||| |||| || ||||| || || || || Sbjct 163409 TCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAG 163468 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | ||||||||||| |||||| |||||| Sbjct 163469 ATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTG 163528 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || |||||| |||| ||| || || ||||| || || ||||| || Sbjct 163529 TCAATGGTGTCGGAGGACTCAACCTCGAGGGTGATCGTCTTTCCGGTCAGGGTCTTGAC 163587 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/215 (71%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | ||||| || ||||| ||||| ||||| | || | | || | || || Sbjct 162935 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACG-TACGACCGTCCTC 162993 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || || || || || || ||||| || | || | || |||||||| Sbjct 162994 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 163053 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 |||||| || || || | ||||| | ||| | |||||| || | || |||| Sbjct 163054 AATCTTGCTCTTCAC--AT--TGTCGATGGTGTCCGATGACTCAACCTCCAGCGTGATGG 163109 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || ||||| |||||||| || |||||||||||| Sbjct 163110 TCTTCCCCGTAAGAGTCTTGACGAAGATCTGCATA 163144 >seq72 Length=40277 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||| ||| | ||||| || ||||| ||||| |||||||| Sbjct 18653 CCTCCGCGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 18712 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || ||||| || ||||| || || || || |||||||| | || Sbjct 18713 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGG 18772 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| ||||| ||||| || | ||||| || | | ||| Sbjct 18773 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGCTCGACTC 18828 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| ||| || || || |||||||| ||||| || ||||||||||| Sbjct 18829 CACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 18879 >seq47 Length=1462733 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 34786 TGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGG 34845 ||| | | ||||| ||||| ||||| || ||| |||| |||| || ||||| || |||| Sbjct 1313793 TGCGTACCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGG 1313734 Query 34846 CAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGA 34905 | || || || || |||||||| | || | ||||||||||| ||||||| |||| Sbjct 1313733 CGAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGA 1313674 Query 34906 CGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 | || | ||||| || | ||| || |||| ||| ||||| || ||||| || Sbjct 1313673 C--AT--TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGG 1313618 Query 34962 GTCTTCACAAA 34972 |||||||| || Sbjct 1313617 GTCTTCACGAA 1313607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633204352800