Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15 104 3e-17 >seq15 Length=644973 Score = 104 bits (114), Expect = 3e-17 Identities = 433/684 (63%), Gaps = 12/684 (2%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| || ||||| || || |||| ||| ||||| || || || || ||||| | | Sbjct 160823 CTCGAACTCATCACCGTAGACATCGGCTAGGCCAGGGCACTCGTTCGGGCACATGAGAGT 160882 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || | | || | || | |||| || | || || ||||||||||| | || Sbjct 160883 CCACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAAAGAGCAAGGAA 160942 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | || | | || || || || ||| | || ||||| || || | Sbjct 160943 GAGGTCGCGAGCACGGATCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 161002 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| | ||||| || || || || || || | |||| || || || || || || Sbjct 161003 AACATCCGAGTGCCACGGCTCCAAGTAGATGGCAAAGGCACCAGGCCGCTTGTTGCCACC 161062 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||| | |||||| || || ||||| | || | | ||| ||||| |||||||| || Sbjct 161063 CTGATCAACATATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGGACGATACCATTGGA 161122 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 | || || || || | || || ||| | || | ||| | || | ||| Sbjct 161123 CGTTCCGTTAGTACCGGCGATGTACGAGCCAGTGGCACGAATACGATGGATATTCAAACC 161182 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| ||||| || || || | |||||| ||| |||||||| || || || || Sbjct 161183 GATACCACCGGCCATCTTGGAGATCATAGCACAAGTTTTCAGGGTATCGTAGATACCCTC 161242 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 || |||||||| |||||| | || || || || | |||| ||| || || Sbjct 161243 GATGCTATCATCCTTCATATCGACAAGGAAGCAGGATGAAAGCTGCGCCTGAGGTGTACC 161302 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | || || | ||||| || |||||| | || |||| | || | | || || || Sbjct 161303 AGCGTTGAAAAGGGTTGGGGAGGCATGAGTGAAGTATTTGCCAGACATGAGGTTGTAGGT 161362 Query 48665 TTCAATAACAGAATCTATAT------CCCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||| || |||| || |||| ||||| | || |||||||| | Sbjct 161363 CTCAATGACCTTCTCTACATTGTCACCCCA------GATACCGACAGCAACACGCATAAT 161416 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | || ||||| || || || ||| || | |||| ||| || || ||||| Sbjct 161417 CATGTGCTGCGGTCTCTCGACGATCTTGCCATCGAGCTTCAGAAGGTAGGACCGCTCCAA 161476 Query 48779 TGTTTTAAAACCAAAATAGTTGTA 48802 || || || || || || | ||| Sbjct 161477 AGTCTTGAAGCCGAAGTATTGGTA 161500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108097364000