Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15 194 3e-44 seq1 192 1e-43 >seq15 Length=644973 Score = 194 bits (214), Expect = 3e-44 Identities = 808/1246 (65%), Gaps = 57/1246 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT-TGGCCTCGGG 221475 |||| ||||||||||||||| ||||| |||||| |||||| || || | | ||||| || Sbjct 160302 GTCAAGGCAGCGTGGTAGATTGTCTCGAAGATCTGCTTGTTCAG-CTGTCTAGCCTCTGG 160360 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||| ||||| || ||| | ||| ||| || || ||||| || || | || Sbjct 160361 CGACTCGAAAGGCATGCGAAGCGCCAAGAAGGTGTCAGCAAGACCCTGAACACCTAGGCC 160420 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||||| | ||||| | ||||| | ||| || || || || || || |||| ||| Sbjct 160421 GATGGGACGGTGTCGCATGTTGCTGTTGCGT--GCCTCCGGGACAGGGTAGTAGTTCACG 160478 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||| ||||| | || ||| | || ||| ||||||||| Sbjct 160479 TCGATGATCTTGTTCAGGTTGTGGACGACGACCTGGGTAACTTCGTGAAGCTTCTGGAAG 160538 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | | || ||| |||| | | ||||| |||| ||| || | Sbjct 160539 TCGTATAC---------GCCTTCGTTGTAG---TCCACGAAAGATGGTAGCGCGAGAGAT 160586 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| ||| || || || ||||| || | | |||| | || || || || ||| Sbjct 160587 GCCAAGTTGCAGACAGCGACCTCATCGGGGGCCGAGTACTCCACAATTTCAGTGCACAGG 160646 Query 221774 TT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TC 221829 || ||||| ||||| || |||| || || || |||||| ||| ||| | || Sbjct 160647 TTTGAGCTGCGA---ATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGATC 160702 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| ||||| ||||||||| |||||| | ||||| | ||| || Sbjct 160703 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCTTCGAGAATGGCATACCACAG 160762 Query 221890 TTCTCTGGCGCTCACCGTCCTCTTGACTGCA----CCCTCGGTCTTTTCATACCCGGTAT 221945 | ||||| || | ||| |||| || ||||| | || | | | || || Sbjct 160763 CT-TCTGGGCCTT---GACCTTCTGACGGCCGCGGCCCTCAGCCTCGTACTTCTCG-TAC 160817 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 | || | | |||| |||||||| | ||| | ||||| || ||| | || |||| Sbjct 160818 AAGGCCT--CGAACTCATCACCGTAGACATCGGCTAGGCCAGGGCACTCGTTCGGGCACA 160875 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | ||| |||| | ||| | | ||| | || |||||| ||||| || ||||| || | Sbjct 160876 TGAGAGTCCACTCGCCGTTCTTCTCGACACGCTTCATGAAAAGGTCGGGAATCCAAAGAG 160935 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | ||||| || | | || |||||| |||| ||| || | ||||| | | Sbjct 160936 CAAGGAAGAGGTCGCGAGCACGGATCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGA 160995 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| |||| || | |||||||||||||| |||| ||| | || || || ||||||| Sbjct 160996 ACTCGAAAACATCCGAGTGCCACGGCTCCAAGTAGATGGCAAAGGCACCAGGCCGCTTGT 161055 Query 222186 TGCCACCCTGATCCACCATCCTCTC-CAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAG 222243 |||||||||||| || ||| |||| | | | |||||||| || || | || || | Sbjct 161056 TGCCACCCTGAT-CAACAT-ATCTCGCGGTGTTGTTGAAGACACGGAGCATAGGGACGAT 161113 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TG 222301 || ||||| ||||| || || ||||||| || ||| | | ||| || Sbjct 161114 ACCATTGGACGTTCCGTTAGTACCGGCGATGTACGAGCCAGTGGCAC---GAATACGATG 161170 Query 222302 G-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | || |||||||||||||| || |||||||| || || | || || || || Sbjct 161171 GATATTCAAACCGATACCACCGGCCATCTTGGAGATCATAGCACAAGTTTTCAGGGTATC 161230 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG- 222419 ||| ||||| || || ||||| | | | || || || || || | ||| | Sbjct 161231 GTAGATACCCTCGATGCTATCATCCTTCATATCGACAAGGAAGCAGGATGAAAGCTGCGC 161290 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 | |||| | || ||||| || || || || ||| || || ||||| | ||||| Sbjct 161291 CTGAGGTGTACCA-GCGTTGAAAAGGGTTGGGGAGGCATGAGTGAAGTATTTGCCAGACA 161349 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCAT 222538 | || | ||| ||||| | ||| | | | ||||| ||| || | | | || Sbjct 161350 TGAGGTTGTAGGTCTCAATGACCTTCTCTACATTGTCACCCCAGATACCG-ACAGCAACA 161408 Query 222539 CTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTAC 222595 | ||| ||||| ||| || ||||| || | | || | ||||| ||| ||||| Sbjct 161409 CGCATAATCATGTGCTGCGGTCTCTCGAC-GATCTTGCCATCGAGCTTCAGA--AGGTAG 161465 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTC 222641 || |||| ||||||||| || ||||| | | || ||||||| Sbjct 161466 GACCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTC 161511 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||| | ||| || ||| | || |||| | |||||||||||||||||||| | || || Sbjct 160049 GTAGATGTTGGAGGTGTAAGGCTCGAAACATTCGTTGTTGCCCAGGATCTGGGAGGTACT 160108 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAATCT-ATTGA--TGGA 221271 ||| |||||||| || ||||||| || |||||| |||| || | ||| |||| ||| Sbjct 160109 GGCAGTGGGCATAGGGGCCACCAACAAACTGTTTCGCACACC-ATTCTGCTTGATCTGGT 160167 Query 221272 CTTTCTCAGCGTGTTCCAGTCACA 221295 | | ||||||| | |||||| || Sbjct 160168 CCT--TCAGCGTTTCCCAGTCCCA 160189 >seq1 Length=3626568 Score = 192 bits (212), Expect = 1e-43 Identities = 344/505 (68%), Gaps = 15/505 (3%) Strand=Plus/Plus Query 25823 GGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGC 25882 ||||||| |||||| |||||||||| | | || || | || |||| | |||| | Sbjct 1873291 GGAAGGCCGATTGGGCCCTGAAGTGGATTACCGACCGGAAGTCCACCTTTGCCCAGCGCC 1873350 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 || | ||||| || || || ||||| ||||| |||||||| | || ||| ||||||||| Sbjct 1873351 TGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCGTCCATCTTCT 1873410 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| || || |||||||| ||| ||| ||||||||||||||| | | Sbjct 1873411 GGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGCG 1873470 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 ||||||| || |||| || || ||||||||||| | | || ||| || | ||| Sbjct 1873471 ACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCG---CACCTG----AAGAAC 1873523 Query 26063 CTTC---TCAA-GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAG 26118 | | ||| |||| |||| | | |||||| || || |||||||||||| ||||| Sbjct 1873524 CGCCCGAGCAAGGAGATCGTCCAGAAGGTCATCACCGATGCCGTGGAGATCGAGCAGGAG 1873583 Query 26119 TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAA 26178 || | | ||||||||| || ||||||| || Sbjct 1873584 TTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCAACCTCATGAAGCAG 1873643 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACA 26236 ||||| |||| || ||||||| ||||| || ||| || || || || ||||| Sbjct 1873644 TACATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCC--CTCGGCAACGACAAGGTCTACC 1873701 Query 26237 GTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCT 26296 | | | ||||| |||||||| ||||| ||||| ||| | | || ||||||||||||| Sbjct 1873702 GCTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCT 1873761 Query 26297 TTGAAAAGAGGGTCGGCGACTATCA 26321 | || ||| | |||||||| || || Sbjct 1873762 TCGAGAAGCGCGTCGGCGAGTACCA 1873786 Score = 91.5 bits (100), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAAC-TCAAACTGGACCGCCGAAGAGAT 25529 ||| | || ||| ||||||||||||| || | || | || |||||||||||||||||| Sbjct 1872878 AAACAGATCTGGCAGATGTACAAGAA-GCACGAAGCATCCTTCTGGACCGCCGAAGAGAT 1872936 Query 25530 TGATCTGGCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTT 25586 || ||| ||||||| | ||| |||| || || || | |||||| || || Sbjct 1872937 CGACCTGTCCAAGGATCTCCACGACTGGAACAACAGACTCACCGATGACGAGAAGTTCTT 1872996 Query 25587 TCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTG 25646 | | | || | | || ||||| || || |||||||| || || |||||||| || Sbjct 1872997 TGTTTCGCACATCCTTGCCTTCTTCGCCGCGTCTGATGGCATTGTCAACGAGAACCTTGT 1873056 Query 25647 CGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | |||| | ||||| ||| ||||| || |||||||||||||| || Sbjct 1873057 CGAGCGGTTCAGTGGCGAAGTCCAGATTCCCGAGGCGCGATGCTTCTACGGTTTCCAAAT 1873116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843638944000