Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq15 214 2e-49 seq1 170 2e-36 seq7 120 4e-21 seq69 118 1e-20 seq12 86.0 8e-11 >seq15 Length=644973 Score = 214 bits (236), Expect = 2e-49 Identities = 270/369 (73%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 18121 GTCGGCTGCATCATCGACGGCGTGCC-GCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179 || || |||||| ||||||| ||||| ||| ||||| || |||||||||||||||| Sbjct 204674 GTGGGATGCATCGTCGACGG-GTGCCCGCCCGGCATGGAGCTCACCGAGGCCGACATCCA 204732 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 ||| ||| || || || || ||||||||| |||| | | |||||||| |||||| Sbjct 204733 GCCGCAGATGACCCGCCGGCGGCCGGGCCAGAGCGCCATCACGACGCCGCGGAACGAGAA 204792 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 || |||||| ||||||||||||||| ||| |||| |||| |||||| | ||| |||| Sbjct 204793 GGACCGCGTCGCCATCCAGTCGGGCACCGAGTTCGGCGTCACCCTCGGCACCCCCATCGG 204852 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG---- 18355 |||| | ||| |||| |||||||||||| ||||| | || | || || Sbjct 204853 CCTCGTCGTGCTCAACGAGGACCAGCGGCCCAAGGACTACGGCAACCAGACCATGGACCT 204912 Query 18356 --TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTC 18413 ||||| || |||||||||| |||||| | | ||||||||| ||||||| Sbjct 204913 CTACCCGCGCCCTAGCCACGCCGACTGGACCTACCTCGAGAAGTACGGCGTCAAGGCCAG 204972 Query 18414 GTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGT 18473 ||||| ||||| || |||||||||||| || ||||||||||||||||| | Sbjct 204973 CAGCGGCGGCGGCCGCAGCTCCGCCCGCGAGACCATCGGCCGCGTCGCCGCCGGCGCCAT 205032 Query 18474 CGCCGAGAA 18482 ||||||||| Sbjct 205033 CGCCGAGAA 205041 Score = 140 bits (154), Expect = 4e-27 Identities = 128/158 (81%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGT-GTGTCGCAACGTGCCGGCAGGCCTCGGCGA 19105 ||||||||||||||||| || || ||||| ||| || | |||| ||||||||||| Sbjct 205277 GACAGCATCGGCGGCACCGTCACCTGCGTCGTG-CGGGGCCTGCCCAGCGGCCTCGGCGA 205335 Query 19106 GCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCAC 19165 ||| ||||| |||||| |||||||| |||||||||||||||||| || ||||| ||||| Sbjct 205336 GCCCTGCTTCGACAAGCTCGAGGCCAAGCTCGCCCACGCCATGCTCTCCATCCCCGCCAC 205395 Query 19166 CAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 |||||| |||||| | ||| ||| || |||| |||| Sbjct 205396 CAAGGGTTTCGAGGTCGGCTCCGGCTTCGGCGGCTGCG 205433 Score = 96.9 bits (106), Expect = 4e-14 Identities = 118/158 (75%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 19579 GGTGGCCTTTAAGCCGCCGGCCACGATCGGCTCCGCGCAGCAGACGTGCGAA-TACGGCG 19637 |||||| || ||||||||||| || ||| || | ||| |||| |||| |||| || Sbjct 205606 GGTGGCGTTCAAGCCGCCGGCGACCATCAGCCAGTCCCAGACGACG-GCGACGTACGACG 205664 Query 19638 GCGAGC---AGGCCACGTTGGAGGCGCGCGGGAGGCACGACCCGTGCGTCGTCGCGCGCG 19694 ||||| ||| | | ||| ||| || |||||||||| |||||||| |||||| Sbjct 205665 GCGAGGCGGAGGGCGAGCTGGCGGCCAAGGGCCGGCACGACCCCTGCGTCGTGCCGCGCG 205724 Query 19695 CGGTCCCCATCGTCGAGGCCATGGCGGCCATGGTCCTC 19732 | || |||||||||||||||||||| ||| | ||| || Sbjct 205725 CCGTTCCCATCGTCGAGGCCATGGCCGCCCTCGTCGTC 205762 Score = 89.7 bits (98), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1628479 AAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCG 1628538 ||||||||||| || ||| ||||||| || ||||||||||| ||| || || | ||| Sbjct 160941 AAGAGGTCGCGAGCACGGATCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCG 161000 Query 1628539 ACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCG 1628598 | || || | |||||||||||||| |||| ||||||||| || |||||| ||| Sbjct 161001 AAAACATCCGAGTGCCACGGCTCCAAGTAGATGGCAAAGGCACCAGGCCGCTTGTTGCCA 161060 Query 1628599 CC 1628600 || Sbjct 161061 CC 161062 >seq1 Length=3626568 Score = 170 bits (188), Expect = 2e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| |||||| |||||| |||||||||||||| |||||||||| Sbjct 1873792 GCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATG 1873733 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||| ||| ||| ||||| | || Sbjct 1873732 TTCTCCATGAAGTCGAAGGGGTTGGTGGAGCGGTAGACCTTGTCGTTGCCGAGGGCGACG 1873673 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| Sbjct 1873672 AGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCGAGC 1873613 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| | | ||||| | ||||||||| ||||| ||| |||| Sbjct 1873612 AGGGCGCAGGGCAGGGCCTCGGTGAGGAACTCCTGCTCGATCTCCACGGCATCGGTGATG 1873553 Query 868931 ATCT 868934 | || Sbjct 1873552 ACCT 1873549 Score = 132 bits (146), Expect = 6e-25 Identities = 146/191 (76%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| ||||||||||| |||||||||||| Sbjct 1873477 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCGCGCTTC 1873418 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || ||||| ||||||| ||| ||| ||| ||| ||||| |||||||||||||| || Sbjct 1873417 TTCAGCCAGAAGATGGACGC-GAAGGCGCCGCTGAAGAAGATACCCTCGACGGCGGCGAA 1873359 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCC--TTGTTGATCCACTTCATCGCC 869356 | |||| || |||| ||||||||| || | ||| | | | |||||||||| ||| Sbjct 1873358 GGCGATCAGGCGCTGGGCAAAGGT-----GGACTTCCGGTCGGTAATCCACTTCAGGGCC 1873304 Query 869357 CAGTCGGCCTT 869367 || |||||||| Sbjct 1873303 CAATCGGCCTT 1873293 >seq7 Length=944196 Score = 120 bits (132), Expect = 4e-21 Identities = 186/261 (71%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCC 1574062 ||| ||||||| || || || |||||| | ||| |||| | | ||| ||||| Sbjct 14664 GGCATCGACGTGGTCCGGAACCGAATCAAGGGCTTCGCGCAGAAGAAGGT-GACGCTGCC 14606 Query 1574063 GCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCA 1574122 | | || || |||||| || | ||||| |||||||| ||| || | ||||||| ||| || Sbjct 14605 GGCGGGGCGGCACAAGCTGGTGATCCTGGACGAGGCGGACAGCATGACGTCGGGGGCGCA 14546 Query 1574123 GCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTG 1574182 |||||| |||||| || ||||| | || | ||||||||||| || || | ||||| Sbjct 14545 GCAGGCGCTGCGGCGGACGATGGAGATCTACTCGAACACGACGCGGTTCGCGTTCGCGTG 14486 Query 1574183 CAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTT 1574240 |||| |||| | | |||||||| | || | |||||| ||||| || ||||| | Sbjct 14485 CAACCAGTCGAACAAGATCATCGAGCCGCTGC--AGTCGCGGTGCGCGATCCTGCGGTAC 14428 Query 1574241 GTGCGCCTGGGTGACGCCCAG 1574261 | ||| ||| ||||| ||| Sbjct 14427 GGGCGGCTGACGGACGCGCAG 14407 >seq69 Length=1216614 Score = 118 bits (130), Expect = 1e-20 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | || ||||| ||||||||| | ||||| ||| |||| |||||| | || |||||| Sbjct 788773 GCCTCTAATTACCTTGACATCAAGGCCCTGCTTGATGTTGGCTGCAAGACAGTCGCCAAC 788832 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||||||||| || |||||||||||||| ||||| || || |||| | ||| Sbjct 788833 ATGATCAAGGGCAAATCTCCCGAGGAGATCCGAAAGACGTTCAATATCACGAACG 788887 >seq12 Length=687976 Score = 86.0 bits (94), Expect = 8e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 755936 GCGCGACAGCGCCACGTAGGCCTGGCCGCAGTCAAAGATGCCGCTCATCGAGATGACGGC 755995 |||||||||||| |||||| ||||||| || ||| || | || |||| | Sbjct 525981 GCGCGACAGCGCGACGTAGACCTGGCCCTCCTCGAAGGCGCGCGAGAGGTTGACGACGAC 526040 Query 755996 CCGGTCCAGCGACATGCCCTGGCACTTGTGGATGGTCATGGCCCAGGCCAGCAGCAGGGG 756055 ||||| |||| || || ||||| |||||||||||||||||||||||| || ||| || Sbjct 526041 GCGGTCGAGCGTCAGGCTCTGGCTCTTGTGGATGGTCATGGCCCAGGCGGGCGCCAGCGG 526100 Query 756056 CACCTGC 756062 || |||| Sbjct 526101 CAGCTGC 526107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107130993531700