Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15 158 1e-33 seq1 111 1e-19 seq21 82.4 7e-11 >seq15 Length=644973 Score = 158 bits (174), Expect = 1e-33 Identities = 581/893 (65%), Gaps = 34/893 (4%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 ||||| || || |||||||| || || ||||| | |||| || | ||| ||| |||| Sbjct 160011 TTGACGACCTGGAACTCGCCAGCAAGGACACGGC-GAGAGTAGATGTTGGAGGTGTAAGG 160069 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| ||| | || || ||||| | || |||| || | || || ||||| ||||| Sbjct 160070 CTCGAAACATTCGTTGTTGCCCAGGATCTGGGAGGTACTGGCAGTGGGCATAGGGGCCAC 160129 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 |||||| ||||||| ||| | | ||| | |||||||| |||| ||||||||| Sbjct 160130 CAACAAACTGTTTCGCACACCATTCTGCTTGATCTGGTCCTTCAGCGTTTCCCAGTCCCA 160189 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 | ||| || ||||| || |||||||||||||||||||| | || | | | ||| Sbjct 160190 AAGGTCG--GACGGCGTGACATTCCACATGTCGTACTGGAGTATGCCCTGTGAGACAGGA 160247 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGC-CTCGAG 147188 ||| || | || | ||| || || || || | ||| || || || || Sbjct 160248 GAGCCTTCGTAAGTGGAGTATGGGCCCTCCACCTTAGCAATTTCCGAGGACGCTGTCAAG 160307 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTC--GCTTCTTCGCTC 147246 || | | ||| || || ||| ||| || ||||| || | ||| || ||| | Sbjct 160308 -GCAGCGTGGTAGATTGTCTCGAAGATCTGCTTGTTCAG--CTGTCTAGCCTCTGGCGAC 160364 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| ||||||| || || || |||| || || | |||||| | ||| | |||||| Sbjct 160365 TCGAAAGGCATGCGAAGCGCCAAGAAGGTGTCAGCAAGACCCTGAACACCTAGGCCGATG 160424 Query 147307 GGTCGATGCTTTTCGTTGCTG-CGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAAT 147365 || || || ||||||| || | || || | || |||| ||| || || Sbjct 160425 GGACGGTGTCGCATGTTGCTGTTGCGT-GCCTCCGGGACAGGGTAGTAGTTCACGTCGAT 160483 Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA 147425 |||||||| ||||| | || || || | || | | | || |||| ||| || || Sbjct 160484 GATCTTGTTCAGGTTGTGGACGACGACCTGGGTAACTTCGTGAAGCTTCTGGAAGTCGTA 160543 Query 147426 AGTCCCGTCTTCG----ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGA 147481 || || | | |||| | | |||| | |||| ||| |||| ||||||| Sbjct 160544 TACGCCTTCGTTGTAGTCCACGAAAG--ATGGT--AGCGCGAGAGATGCCAAGTTGCAGA 160599 Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCATT 147538 | || ||| |||| | | ||||| ||| ||||| | ||||||||| ||||| Sbjct 160600 CAGCGACCTCATCGGGGGCCGAGTACTCCACAATTTCAGTGCACAGGTTTGAGCTGC--- 160656 Query 147539 TTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGT 147598 ||| || | || | ||| ||||| || || ||||| || ||| |||||||| Sbjct 160657 GAATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGA 160716 Query 147599 ACGGTCCGCCGGTCTCGACTTGCGTTTC---AACGATAAACCTATGCAGGTCCTGCGCTC 147655 | || ||| |||||| || | ||| || | | ||| ||| | ||| || Sbjct 160717 AGGGGTTGCCAGTCTCGGTCTGAGCTTCGAGAATGGCATACC---ACAGCTTCTGGGCCT 160773 Query 147656 GCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGT 147715 ||| ||| || ||||||||| |||||| ||||||||| ||| ||||| | Sbjct 160774 TGACCTTCTGACGGCCGCGGCCCTCAGCCTCGTACTTCTCGTACAAGGCCTCGAACTCAT 160833 Query 147716 CGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 147768 | |||||| |||||| ||||| || |||| | ||| ||||| || | |||| Sbjct 160834 CACCGTAGACATCGGCTAGGCCAGGGCACTCGTTCGGGCACATGAGAGTCCAC 160886 >seq1 Length=3626568 Score = 111 bits (122), Expect = 1e-19 Identities = 341/517 (66%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGA-GAGCGAGACCGC 46816 || || ||| ||||| |||||| | |||||| |||||||||| || || || | Sbjct 1873275 GTCCCCTGCATTCGCCGGAAGGCCGATTGGGCCCTGAAGTGGATTACCGACCG-GAAGTC 1873333 Query 46817 CACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAG 46876 ||| | ||| ||||| || | || ||||| ||||| || | || || ||| Sbjct 1873334 CACCTTTGCCCAGCGCCTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGC 1873393 Query 46877 TTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAA 46936 || || |||| || | | || | ||| | ||||| |||||||| ||| || Sbjct 1873394 CTTCGCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAA 1873453 Query 46937 CGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGA 46995 |||| | |||||||||||||| || || ||||| ||||| || || || || || Sbjct 1873454 CGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCT---- 1873509 Query 46996 CGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGA 47055 ||| | |||| | | | ||| | ||| || | | | || || ||| Sbjct 1873510 CGCACCTGAAGAACCGCCCGAGCAAGGAGATCGTCCAGAAGGTCATCACCGATGCCGTGG 1873569 Query 47056 GCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCAC 47115 ||||| ||||||| | || | ||| |||||| |||| |||| ||||||||||| | Sbjct 1873570 AGATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGC-C 1873628 Query 47116 AGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAA 47174 | || ||| | || || ||||| || || || || ||| | || ||||| ||| Sbjct 1873629 AACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGG-CAA 1873687 Query 47175 CCGAAATATTTTAATGCTC--GTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGG 47232 ||| | | || |||| || || || || || ||| | ||||| ||||||| | Sbjct 1873688 -CGACAAGGTCTACCGCTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCG 1873746 Query 47233 GCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 |||| ||||| || |||||||| || ||||| ||||| Sbjct 1873747 GCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 1873783 >seq21 Length=521316 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | | ||| || || |||||||||||||||| ||||| Sbjct 162929 CGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTACGACCG 162988 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| ||||| | | || |||||||| ||||| || || |||||||| || Sbjct 162989 TCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGATCCGGGGGAATGCCTTCCTTG 163048 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || || | | ||| || || | ||| | Sbjct 163049 TCCTGAATCTTGCTCTTCACATTGTCGATGGTGTCCGATGACTCAACCTCCAGCGTGATG 163108 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| || | ||| |||||||| Sbjct 163109 GTCTTCCCCGTAAGAGTCTTGACGAAGATCTGCAT 163143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610604236000