Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq14 210 7e-49 seq21 120 9e-22 seq6 87.8 5e-12 >seq14 Length=2677235 Score = 210 bits (232), Expect = 7e-49 Identities = 693/1071 (65%), Gaps = 5/1071 (0%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || || || || ||| |||| |||||||| | |||||| || || || Sbjct 2317459 GAGATTATTGCCAACGACCAGGGCAACCGAACGACGCCATCGTTCGTTGCCTTCACGGAC 2317400 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 |||||||| |||| |||||| | || || || || | || || || | || || Sbjct 2317399 ACTGAGCGCCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACA 2317340 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || ||||| || ||||| | | || || ||| || | || Sbjct 2317339 GTCTTCGACGCCAAGCGTCTGATTGGCCGCAAGTTCTCCGACGCTGAGGTTCAGGCCGAC 2317280 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || |||| | | || | |||| | || || || || | |||| Sbjct 2317279 ATGAAGCACTTCCCCTTTAA-GATCATCGAGAAGAGCG-GA-AAGCCCATCGTCCAGGTC 2317223 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561 || || || ||||| || || || || ||||| || || || || ||||| || Sbjct 2317222 GAGTACAAGGGTGAGCAGAAGCAGTTCACTCCCGAGGAGATCTCGTCTATGGTCTTGACC 2317163 Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||| ||| | ||||| | || | |||| | || || | ||||| ||||| Sbjct 2317162 AAGATGAGGGAGACGGCTGAGTCTTACCTTGGTGGTAACGTCACCAACGCTGTCATTACC 2317103 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || | |||||| || || || ||||| || |||||| Sbjct 2317102 GTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTCATTGCT 2317043 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || ||||| |||| || ||||| ||||| ||||| || || || || || ||| Sbjct 2317042 GGTCTGAACGTTCTCCGAATCATCAATGAGCCCACGGCTGCCGCCATCGCCTACGGTCTT 2316983 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | || || ||| | || ||||| || | ||||||||||| || Sbjct 2316982 GACAAGAAGTCCGAGGGCGAGCGCAATGTCCTCATTTTCGACCTTGGTGGTGGTACCTTC 2316923 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || || || | || ||||| || || || || || | || |||||||| Sbjct 2316922 GATGTCTCCCTTCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCTGGTGAC 2316863 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTT 349921 || || | ||||| || || || || || ||||| || || || || || ||||| Sbjct 2316862 ACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAATGAATTC 2316803 Query 349922 AAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 ||||| ||||| || | || | || || | || | || || || | || Sbjct 2316802 AAGCG-CAAGCACAAGAAGGACCTCTCGTCCAACGCTCGTGCTCTCCGACGTCTCCGCAC 2316744 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 || ||||| ||||| |||||| | | || ||| || |||| ||||| ||||| || || Sbjct 2316743 CGCTTGTGAGCGTGCCAAGCGTACTCTGTCGTCTTCTGCCCAGACCTCGATTGAGATCGA 2316684 Query 350041 TTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || || || || | || |||| | || ||||| || || | || || || | Sbjct 2316683 CTCCCTGTTCGAGGGTATTGACTTCTACACCTCCATTACCCGAGCCAGATTCGAGGAGCT 2316624 Query 350101 ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAA 350160 || ||| || || || | || || | || || || || || ||||| || Sbjct 2316623 CTGCCAGGACCTCTTCCGATCCACCATCCAGCCCGTCGACCGTGTCTTGGCCGATGCTAA 2316564 Query 350161 AATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAA 350220 || ||| |||| | | || | ||| | || ||||| || || ||||| || Sbjct 2316563 GATCGACAAGTCTCAGGTCCACGAGATCGTTCTCGTCGGTGGCTCCACGCGTATCCCCCG 2316504 Query 350221 AGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCC 350280 || || || | | | || | || || ||||| || || | || || || || Sbjct 2316503 TGTCCAGAAGCTCATTGCCGACTACTTCAACGGCAAGGAGCCCAACAAGTCCATCAACCC 2316444 Query 350281 AGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 ||||| |||||||| || |||||||| || ||||| |||| | ||||| Sbjct 2316443 CGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCTATCCTGTCTGG 2316393 >seq21 Length=521316 Score = 120 bits (132), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| || || || || ||||| || ||||| || || || Sbjct 163369 CATACCACCGCGGAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 163428 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || || || || ||||| ||||| | || ||||| || || Sbjct 163429 GGAAAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGG 163488 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || ||||| | || || | || Sbjct 163489 AGGAATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATGGTGTCGGAGGACTC 163548 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| || || || | ||||||||||| || || || || Sbjct 163549 AACCTCGAGGGTGATCGTCTTTCCGGTCAGGGTCTTGAC 163587 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || || ||||| || ||| || || || || || || Sbjct 163649 CATGCCACCACGCAGACGGAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTC 163708 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || || || || ||||||||||| ||||||||||| || || Sbjct 163709 AGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGG 163768 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || || || | || || | || Sbjct 163769 CGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCCGAGGACTC 163828 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 163829 GACCTCCAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAGATCTGCAT 163879 Score = 96.9 bits (106), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || || || || || || || || || || Sbjct 163141 CATACCACCACGGAGCCGGAGAACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTC 163200 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || ||||| || || || | || || || || ||||| || || || || || || Sbjct 163201 GCTTAGCGTTCGGCCGTCCTCCAACTGCTTACCGGCGAAGATAAGTCGCTGTTGGTCGGG 163260 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || || || || || ||||| ||||| ||| || || || || || | ||| || | | Sbjct 163261 CGGGATACCCTCCTTGTCCTGGATTTT-GCTCTTCACGTTGTCGATGGTATCCGACGACT 163319 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 163320 CGACCTCAAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 163371 >seq6 Length=957631 Score = 87.8 bits (96), Expect = 5e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | ||||||||| || || | || ||||| || |||||||| || Sbjct 696961 CGCGGCACACCAAGAGTAACATTC---TTGGACGAAATACCAGTGAAATGGAAAGTGTTC 697017 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | || || | ||||| ||||||||||| || || | || ||||||||||| Sbjct 697018 AGAGTCATCTGCGTGGCAGGCTCGCCAATTGACTGGGCGGCCAGCACACCAACCATTTCG 697077 Query 377578 CCAGGATTGACAAT 377591 || || || || || Sbjct 697078 CCGGGGTTAACCAT 697091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252458580300