Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 315 8e-81 >seq15 Length=644973 Score = 315 bits (348), Expect = 8e-81 Identities = 505/715 (71%), Gaps = 24/715 (3%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGA--GCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 |||||| ||| || | ||| | |||| ||||| || || ||| | |||||||| ||| Sbjct 161366 TGAGACCTACAACCTCATGTCTGGCAAA--TACTTCACTCATGCCTCCCCAACCCTTTTC 161309 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||||||||| ||| | ||| | || ||||||||| || | ||||||||||| Sbjct 161308 AACGCTGGTACACCTCAGGCGCAGCTTTCATCCTGCTTCCTTGTCGATATGAAGGATGAT 161249 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 ||||| || |||||||| || || || ||||| ||||||||| | | ||| Sbjct 161248 AGCATCGAGGGTATCTACGATACCCTGAAAACTTGTGCTATGATCTCCAAGATGGCCGGT 161189 Query 53420 GGTATCGGT------ATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGG 53473 ||||||||| ||||| ||| | | ||||| | ||| | ||| || Sbjct 161188 GGTATCGGTTTGAATATCCA----TCGTA--TTCGTGCCACTGGCTCGTACATCGCCGGT 161135 Query 53474 ACGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 || ||||| |||| | |||| ||||| ||||||||||| |||||||||||||| || Sbjct 161134 ACTAACGGAACGTC--CAATGGTATCGTCCCTATGCTCCGTGTCTTCAACAACACCGCGA 161077 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | || || | |||||||| ||||| || | || ||||||||| | ||||||| Sbjct 161076 GATATGTTGATCAGGGTGGCAACAAGCGGCCTGGTGCCTTTGCCATCTACTTGGAGCCGT 161017 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 ||||| | || || | ||||| || || || ||| ||| || ||| | || ||||| | Sbjct 161016 GGCACTCGGATGTTTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGATCC 160957 Query 53652 GCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 | ||| || ||||| || ||||| |||||||| ||||| |||||| | || ||| Sbjct 160956 G-TGCTCGCGACCTCTTCCTTGCTCTTTGGATTCCCGACCTTTTCATGAAGCGTGTCGAG 160898 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTAC 53770 ||| ||| |||||| || |||||||||||||||||||| ||||| | ||||||| Sbjct 160897 AAGAACGGCGAGTGGACTCTCATGTGCCCGAACGAGTGCCCTGGCCTAGCCGATGTCTAC 160838 Query 53771 GGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAG 53830 ||||| ||||| | | |||| || ||||| | | |||||||| | ||||| Sbjct 160837 GGTGATGAGTTCGAGGCCTTGTACGAGAAGTACGAGGCTGAGGGCCGCGGCCGTCAGAAG 160778 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCC 53889 |||||||| | || | ||| |||| || ||| | ||| ||| ||||| || | || Sbjct 160777 GTCAAGGCCCAGAAGCTGTGGTATGCCATTCTCGA-AGCTCAGACCGAGACTGGCAACCC 160719 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 | |||| |||||||||| |||| |||||||||||||||||| ||||| Sbjct 160718 CTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGC 160664 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | |||||||||||||| || | || || | ||||||||| | ||||| Sbjct 160540 GACTTCCAGAAGCTTCACGAAGTTACCCAGGTCGTCGTCCACAACCTGAACAAGATCATC 160481 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| ||| |||||||| | ||| ||||| |||| | || ||||| |||||| Sbjct 160480 GACGTGAACTACTACCCTGTCCCGGAGGCACGCAACAGCAACATGCGACACCGTCCCATC 160421 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | | | ||||| ||||| | || |||| |||| || ||| | |||| ||||| ||| Sbjct 160420 GGCCTAGGTGTTCAGGGTCTTGCTGACACCTTCTTGGCGCTTCGCATGCCTTTCGAGTCG 160361 Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC 55309 | ||| || | | ||| || | |||||| Sbjct 160360 CCAGAGGCTAGACAGCTGAACAAGCAGATCTTC 160328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215315980000