Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq15 327 1e-84 seq21 170 2e-37 seq72 167 3e-36 seq47 138 1e-27 seq58 95.1 1e-14 >seq15 Length=644973 Score = 327 bits (362), Expect = 1e-84 Identities = 935/1424 (66%), Gaps = 34/1424 (2%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414 ||||| || || ||| || || ||| || | ||| | ||||||||||| || || Sbjct 160023 AACTCGCCAGCAAGGACACGGCG-AGAGTAGATGTTGGAGGTGTAAGGCTCGAAACATTC 160081 Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474 |||||| || |||||||| | || || || || ||||| ||| | ||||||| || Sbjct 160082 GTTGTTGCCCAGGATCTGGGAGGTACTGGCAGTGGGCATAGGGGCCACCAACAAACTGTT 160141 Query 80475 CCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAATCTGA---CCAAAAATCAACCCC 80528 |||| || | || |||||| | ||| || || | ||||| || Sbjct 160142 TCGCACACCATTCTGCTTGATCTGGTCCTTCAGCGTTTCCCAGTCCCAAAGGTCGG---- 160197 Query 80529 AACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCG 80586 ||| ||||| ||||||||||| ||| | ||||||| || | ||||| || || Sbjct 160198 -ACGGCGTGACATTCCACATGTCGTACTGGAGTATGCCCTGTGAGACAGGAGAGCCTTCG 160256 Query 80587 AACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGA 80646 | || ||| ||||||||| ||| || | || | ||| | | | ||| ||||| Sbjct 160257 TAAGTGGAGTATGGGCCCTCCACCTTAGCAATTTCCGAGGACGCTGTCAAGGCAGCGTGG 160316 Query 80647 TAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAG 80706 || || ||| |||| |||||||| | |||| ||| ||||| | || | Sbjct 160317 TAGATTGTCTCGAAGATCTGCTTGTTCAGCTGTCTAGCCTCTGGCGACTCGAAAGGCATG 160376 Query 80707 CCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC 80766 | | | || ||| |||||| || |||||||| || | | |||| || ||||| ||| Sbjct 160377 CGAAGCGCCAAGAAGGTGTCAGCAAGACCCTGAACACCTAGGCCGATGGGACGGTGTCGC 160436 Query 80767 TTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAG 80825 |||| | | || |||||||| | ||||| |||| ||||||| |||||| Sbjct 160437 ATGTT-GCTGTTGCGTGCCTCCGGGACAGGGTAGTAGTTCACGTCGATGATCTTGTTCAG 160495 Query 80826 GTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTT 80879 |||| | || ||| | ||||| || ||||| ||||| |||||| || | ||| Sbjct 160496 GTTGTGGACGACGACCTGGGTAACTTCGTGAAGCTTCTGGAAGTCGTATACGCCTTCGTT 160555 Query 80880 CCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGC 80939 | ||| || | || || || || |||| ||||| || || ||||| || | Sbjct 160556 GTAGTCCACGAAAGATGGTAGCGCGAGAGATGCCAAGTTGCAGACAGCGACCTCATCGGG 160615 Query 80940 ATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTT 80999 | | |||| || ||||| ||||||| || || ||| || || ||||| || Sbjct 160616 GGCCGAGTACTCCACAATTTCAGTGCACAGGTTTGAGCTGCGAATGGTGCCGAGGTTCTT 160675 Query 81000 CTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGAC 81059 |||||| |||| |||||| ||||||||| |||| | ||| | || |||||| Sbjct 160676 CTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGT 160735 Query 81060 CTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCC 81119 ||| | | ||| ||||| | ||| | || | ||||||||| || ||| ||| Sbjct 160736 CTGAGCTTCGAGAATGGCATACCACAGCTTCTGGGCCTTGACCTTCTGACGGCCGCGGCC 160795 Query 81120 TTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTC 81179 || ||| | ||||| |||| | ||||||| |||||| | || | ||| | Sbjct 160796 CTCAGCCTCGTACTTCTCGTACAAGGCCTCGAACTCATCACCGTAGACATCGGCTAGGCC 160855 Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239 ||||||||||| |||||||| || ||| ||| || ||||| ||| ||||||||| Sbjct 160856 AGGGCACTCGTTCGGGCACATGAGAGTCCACTCGCCGTTCTTCTCGACACGCTTCATGAA 160915 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCT 81298 | ||| || ||||| || || ||| |||||||| ||| || |||||| | ||| | Sbjct 160916 AAGGTCGGGAATCCAAAGAGCAAGGAAGAGGTCGCGAGCA-CGGATCTCCTCTTTACCGT 160974 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| || | || || || || | | |||| ||||| ||||||| || | || Sbjct 160975 GGTTCTTACGGAGATCAAGGAACTCGAAAACATCCGAGTGCCACGGCTCCAAGTAGATGG 161034 Query 81359 CGATCGACCCCTTGCGAC----GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 | | | | || || | ||||||||| | || || | || || ||| || Sbjct 161035 C-AAAGGCACCAGGCCGCTTGTTGCCACCCTGATCAACATATCTCGCGGTGTTGTTGAAG 161093 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 ||||| | |||||||| |||||||| ||| ||||| ||||| |||| ||| || Sbjct 161094 ACACGGAGCATAGGGACGATACCATTGGACGTTCCGTTAGTACCGGCGATGTACGAGCCA 161153 Query 81475 TTGGCGCG--CACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 |||| || || || ||| || |||||| ||||| | | ||| || ||| || Sbjct 161154 GTGGCACGAATACGATGGATATTCAA--ACCGATACCACCGGCCATCTTGGAGATCATAG 161211 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 |||| |||| ||| || || || |||||||||||||| | ||||| || | | || Sbjct 161212 CACAAGTTTTCAGGGTATCGTAGATACCCTCGATGCTATCATCCTTCATATCGACAAGGA 161271 Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAA 81652 | ||| ||| | ||| | || || || ||||| || ||||||| || ||| Sbjct 161272 AGCAGGATGAAAGCTGCGCCTGAGGTGTACCAGCGTTGAAAAGGGTTGGGGAGGCATGAG 161331 Query 81653 TGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGT 81712 |||| || | ||||| |||| ||||| || |||| | || |||||| Sbjct 161332 TGAAGTATTTGCCAGACATGAGGTTGTAGGTCTCAATGACCTTCTCTACATTGTCACCCC 161391 Query 81713 GAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 ||||||| ||| |||||||||| ||||| ||| || ||||| Sbjct 161392 AGATACCGACAGCAACACGCATAATCATGTGCTGCGGTCTCTCG 161435 >seq21 Length=521316 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| || ||||| || || || |||||||||||| Sbjct 163143 ATGCAGATCTTCGTCAAGACTCTTACGGGGAAGACCATCACGCTGGAGGTTGAGTCATCG 163084 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || |||||||||||||| || ||||| || || ||| Sbjct 163083 GACACCATCGACAATGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAG 163024 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| ||||| ||||||||||| || ||||| | |||||| | ||| ||||| || Sbjct 163023 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGTCGTACGTTGAGC-GACTACAA 162965 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| || || | ||| ||||||| || ||||| || Sbjct 162964 CATCCAGAAGGAGAGCACCCTCCACTTGGTCCTGCGTCTCCGTGGTGGGCA 162914 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||| ||||| || || || ||||||||||| || | ||||| Sbjct 163587 GTCAAGACCCTGACCGGAAAGACGATCACCCTCGAGGTTGAGTCCTCCGACACCATTGAC 163528 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || ||||||||||||||||| |||||||| ||||||||||| | || Sbjct 163527 AACGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGATTGATC 163468 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||||||||| |||||||||| || ||||| | ||||| || | || ||||| Sbjct 163467 TTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCCGACTACAACATTCAGAAGGAG 163408 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || || || | ||||| |||||||| Sbjct 163407 TCCACCCTCCACCTCGTTCTTCGTCTCCGCGGTGG 163373 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| Sbjct 163879 ATGCAGATCTTCGTCAAGACTCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCCTCG 163820 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 163819 GACACTATCGACAACGTCAAGTCAAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 163760 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||| ||||| |||||||||| || ||||| | ||||| || Sbjct 163759 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCTGACTACAAC 163700 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| ||||| || ||| | ||||| || ||||| Sbjct 163699 ATCCAGAAGGAGAGCACCCTTCACCTGGTCCTCCGTCTGCGTGGTGG 163653 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||||||||| || || |||||||| ||||| Sbjct 163371 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 163312 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||| ||||| |||||||||||||| || || || ||||| Sbjct 163311 GATACCATCGACAACGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCAA 163252 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || |||||||| | ||||| | || || ||| ||||| || Sbjct 163251 CAGCGACTTATCTTCGCCGGTAAGCAGTTGGAGGACGGCCGAACGCTAAGCGACTACAAC 163192 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || || || | || || || ||||| Sbjct 163191 ATCCAGAAGGAATCGACGCTGCACCTGGTTCTCCGGCTCCGTGGTGG 163145 >seq72 Length=40277 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || || ||||| ||||| Sbjct 18882 ATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCG 18823 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | ||| | ||| || || |||||||||||||| || ||||| ||| Sbjct 18822 AGCGACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGAC 18763 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| ||||| || || ||||| |||||||| | || ||||| | ||||| Sbjct 18762 CAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCTCGGACTAC 18703 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||| || || || ||| |||| || ||||| || Sbjct 18702 AACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGCGGAGG 18653 >seq47 Length=1462733 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 1313607 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATC 1313666 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || ||||||||||||||||| || ||||| |||||||||||||| Sbjct 1313667 GACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTG 1313726 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 ||||| || || ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 1313727 ATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 1313786 Query 27595 G 27595 | Sbjct 1313787 G 1313787 >seq58 Length=1240041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/216 (71%), Gaps = 18/216 (8%) Strand=Plus/Plus Query 30355 GAAAAAATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACT---AC 30411 || ||| ||| || || |||||| | ||||| |||||| | | | ||||||| || Sbjct 132352 GAGAAAGTCTATATTCCAGAACTCGTGTTTGGCCACCTTCTCGCCGGATCCAACTTCGAC 132411 Query 30412 AACGACGAGGAGCAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAAC 30471 |||||||| || || |||| ||||| ||||| || || |||||||||||| |||| Sbjct 132412 GACGACGAGAAGAAGACCGTG---GGTGGTCGAAACGGATATGGTGCAAAGCTCTGCAAC 132468 Query 30472 GTTTTC-------AGTTCCCTATTCAAAATCAAAATT--AGTGACGGGAAGAAGATATAT 30522 |||||| ||||| || | | |||| ||| | |||| ||| ||||||| Sbjct 132469 GTTTTCAGTACTGAGTTCACTCTCGAGTGTCAAGATTCCAAGAACGGCAAG-AGATATA- 132526 Query 30523 GAGCAGACTTGGACAGATAACATGAGCAAGGTGAAC 30558 | ||||| |||| ||| |||||||||| | || || Sbjct 132527 -AACAGACATGGAGAGACAACATGAGCAGGATGGAC 132561 Score = 89.7 bits (98), Expect = 6e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || ||| | ||||| ||||| ||||| || || ||||| ||||| || ||| | Sbjct 134107 GATGGCTTGAAGCCGGGTCAGCGAAAGGTCATCTATTCCTGCTTCAAGCGAAATCTGACC 134166 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | |||| |||||| || | | || |||||| | ||||| || || || || ||| Sbjct 134167 AAGGACAAGAAGGTCATCGAGTTAGCCGGTTACGTGTCTGAGCAGACTGCTTACCAGCAC 134226 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 || || || | ||| || || | || || |||||||||||||| | || Sbjct 134227 GGTGATATATCCTTGCAGCAAACAATCATTGGTCTAGCACAGAACTTTGTCGGCTCCAAC 134286 Query 32164 AACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGAT 32223 ||| | |||| ||||| ||| || | || || |||| || || ||||| ||| Sbjct 134287 AACGTCAACTGTCTCGAACCAAGCGGTAACTTCGGTTCCCGTCTTGCGGGTGGTTCAGAT 134346 Query 32224 GCTGCGAGCTCCCGTTACATCTTCACCCGTCT 32255 ||||| ||| ||||||||||| ||| ||||| Sbjct 134347 GCTGCCAGCGCCCGTTACATCCACACTCGTCT 134378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309687112000