Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq72 98.7 6e-16 seq21 93.3 3e-14 >seq72 Length=40277 Score = 98.7 bits (108), Expect = 6e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || |||| |||| ||||| ||||||||||| || ||||| || || | Sbjct 18651 CGCCTCCGCGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCG 18710 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || |||| || || || || ||||| || || | |||||| |||||||| | Sbjct 18711 AGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAG 18770 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | ||||||||||| |||| || | || || | || ||||| ||| ||| Sbjct 18771 GGATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTCGATGGTGTCGCTCG-ACTC 18828 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || | ||| || || || || || | || || || || ||||||||| Sbjct 18829 CACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 18880 >seq21 Length=521316 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| || || ||||||||||| || ||||| || || || || || || Sbjct 163662 AGACGGAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 163721 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||| || ||||| ||||| | |||||| Sbjct 163722 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGCGGAATGCCCTCC 163781 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| || ||| | || ||||| | ||| || |||| ||| Sbjct 163782 TTGTCCTGGATC-TTTGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACCTCCAGGGT 163840 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || | || || || || |||||||| ||| Sbjct 163841 GATGGTCTTGCCCGTGAGAGTCTTGACGAAGATCTGCATCTTG 163883 Score = 87.8 bits (96), Expect = 1e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| |||||||| || || ||||| ||||| | || || || || Sbjct 163397 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCGAGCTGC 163456 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || || ||||| ||||| || || | ||||||||||| ||| || Sbjct 163457 TTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC-CTGAATCTT 163515 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| | ||| || || | ||| ||||| || ||||| Sbjct 163516 TGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCGAGGGTGATCGTCTTTCCGGT 163575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729216423300