Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xylaria_20sp._20JS573_20[genbank_20GCA_5F000966885.1_202015-03-31] 100 sequences; 40,886,495 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq72 156 3e-33 seq21 138 8e-28 seq47 122 6e-23 >seq72 Length=40277 Score = 156 bits (172), Expect = 3e-33 Identities = 175/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || ||||||||||| ||||||||||| || | | Sbjct 18653 CCTCCGCGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 18712 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| || |||||||| ||||| || |||| ||||||||| || | ||| Sbjct 18713 AGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGG 18772 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | ||||||||| || |||| Sbjct 18773 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT--CGATGGTGTCGCTCGACTCCA 18830 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| | || || ||||| |||||||||||||| |||||||| |||||||| Sbjct 18831 CCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 18882 >seq21 Length=521316 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| ||||||||||| ||||||||||| || | ||| ||| | || || Sbjct 163671 ACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 163730 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | ||| ||||| || | || | || ||||| ||| Sbjct 163731 AGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGG 163790 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | ||| || ||||||| || || ||||| Sbjct 163791 ATCTTTGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTG 163850 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| |||||||| ||||| Sbjct 163851 CCCGTGAGAGTCTTGACGAAGATCTGCAT 163879 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||||||||||| ||||||||||| ||| | || |||| ||| Sbjct 162935 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTACGACCGTCCTCC 162994 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || || | |||||||||||| | || | |||||||| ||| Sbjct 162995 AGCTGCTTACCAGCGAAAATGAGACGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 163054 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||| | || || ||||||| ||| || ||||| Sbjct 163055 ATCTTGCTCTTCACATTGTCGATGGTGTCCGATGACTCAACCTCCAGCGTGATGGTCTTC 163114 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || ||||| |||||||| ||||| Sbjct 163115 CCCGTAAGAGTCTTGACGAAGATCTGCAT 163143 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| || |||||||| |||| || || | || || Sbjct 163391 ACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCG 163450 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||| |||||||| || | ||| | || ||||| ||| Sbjct 163451 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGA 163510 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| ||| || ||||| | || ||||||||| Sbjct 163511 ATCTTTGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCGAGGGTGATCGTCTTT 163570 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || || |||||||| |||| Sbjct 163571 CCGGTCAGGGTCTTGACGA 163589 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| ||||| ||||| ||||||||||| ||| || || |||| ||| Sbjct 163163 ACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTTAGCGTTCGGCCGTCCTCC 163222 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| ||||| ||||| | ||||| || || | || | ||| ||||| ||| Sbjct 163223 AACTGCTTACCGGCGAAGATAAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGG 163282 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| | | ||||| || | || || ||||| | || || ||||| Sbjct 163283 ATTTTGCTCTTCACGTTGTCGATGGTATCCGACGACTCGACCTCAAGGGTGATGGTCTTG 163342 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||| ||||| Sbjct 163343 CCGGTCAGCGTCTTGACGAAGATCTGCAT 163371 >seq47 Length=1462733 Score = 122 bits (134), Expect = 6e-23 Identities = 138/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| ||||| || | Sbjct 1313787 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 1313728 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | ||| | || ||||| ||| |||||| ||| || ||| Sbjct 1313727 TCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGT 1313668 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| || |||||||| | || || ||||| ||||| ||||||||||| Sbjct 1313667 --CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1313610 Query 44326 GAA 44328 ||| Sbjct 1313609 GAA 1313607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989961261700