Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1655 165 2e-35 >seq1655 Length=66175 Score = 165 bits (182), Expect = 2e-35 Identities = 573/878 (65%), Gaps = 21/878 (2%) Strand=Plus/Plus Query 229772 ATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAG 229831 |||| | || ||| | |||||||||||||| | ||| ||||||||||| | ||||| Sbjct 51318 ATCCATAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGA 51377 Query 229832 TTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATT 229891 | |||| | || | ||||||| || ||||| |||||||| || | Sbjct 51378 TCGATCTGTCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCT 51437 Query 229892 TCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGC 229951 ||||| ||| |||| | || ||||| | ||||||||| || || | || || || | Sbjct 51438 TCATCTCTCACGTCCTGGCCTTCTTCGCTGCCTCCGATGGAATCGTCAATGAGAACCT-C 51496 Query 229952 A--GACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCA 230009 | || | ||| |||| || || | | || ||||| || || || | || ||| Sbjct 51497 ATTGAGCG-CTTCAGTGGAGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCA 51555 Query 230010 AACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTC 230069 || | | || ||||| || || ||| | || || ||||| | || || Sbjct 51556 AATCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGATACA--TACATC 51613 Query 230070 CGACGAGC--AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCA 230126 | ||||| ||| | | ||| | || || | ||||| || |||||||| | | Sbjct 51614 AG-CGAGCCCAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCG 51672 Query 230127 TAACAAGGCAAAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCG---TTTGCCGAG 230181 ||| ||||| | ||||| | | |||| || || | || ||| |||||| Sbjct 51673 TAAGAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAG--AACTCGACCTTTGCCTGC 51730 Query 230182 CGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCAT 230240 |||||| |||||| | | || || || | || ||||| ||| ||| |||| Sbjct 51731 CGTCTCATCGCCTTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTC-GCGTCCAT 51789 Query 230241 CTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAG 230300 ||| ||| || ||| ||| | ||||| |||||| | || |||||| ||||| Sbjct 51790 CTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTC 51849 Query 230301 TCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACA 230359 || |||||||| | || || | | |||| | || ||| || | ||| | |||| Sbjct 51850 CCGTGACGAGGGCATGCA-CACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACA 51908 Query 230360 AGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGT 230419 ||| | || | || || || | ||||| || || || |||| | ||| |||||| Sbjct 51909 AGCCATCAAACCAGGTTGTTGAAGACATCATCACCGAGGCCGTTGTCATCGAGCAGGAGT 51968 Query 230420 TCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGT 230479 | | ||||| | |||||| || | || |||||||| | || ||| | |||| Sbjct 51969 TTCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAGT 52028 Query 230480 ACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACT 230539 ||||||| ||||| |||||||| | | | ||||| || || |||| |||||| Sbjct 52029 ACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACG 52088 Query 230540 CTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCG 230599 | | |||||||| | ||||||||| ||| || || ||| || ||||||||||||| Sbjct 52089 CCACAAACCCCTTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAACTTCTTCG 52148 Query 230600 AAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 | ||||||||| | ||||| || | | | ||||| ||| Sbjct 52149 AGAAGCGTGTCGGCGACTACCAAAAGGCCGGTGTCATG 52186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057774218471990