Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1655 363 2e-95 seq3230 120 3e-22 seq2882 109 6e-19 seq2320 91.5 2e-13 >seq1655 Length=66175 Score = 363 bits (402), Expect = 2e-95 Identities = 572/804 (71%), Gaps = 15/804 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | || ||| Sbjct 51326 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATCGATCTG 51385 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | |||| | |||||| |||||||| |||||| Sbjct 51386 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCT 51445 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||||||| ||||| ||| ||| || |||||||| ||||| || | ||||| Sbjct 51446 CACGTCCTGGCCTTCTTCGCTGCCTCCGATGGAATCGTCAATGAGAACCTCATTGAGCGC 51505 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||||||| | ||||||| || ||||||||||| || || ||| ||| Sbjct 51506 TTCAGTGGAGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAAATCATGATG 51565 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| || | || || ||||||||| || ||| | || | || Sbjct 51566 GAGAACATCCACTCCGAGACATACTCCCTCCTCATCGATACATACATCAGCGAGCCCAAG 51625 Query 116933 GAGAAGCTCCGT--TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 | | || ||| | || ||||||||||| | || || ||| || ||||||| | Sbjct 51626 CA-ACGC-ACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTG 51683 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCC 117049 | ||||||||||| |||||| ||| || ||| || |||| | | || || | ||| Sbjct 51684 ACTGGGCGCTGCGATGGATCTCCGACA-AGAACTCGACCTTTGCCTGCCGTCTCATCGCC 51742 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || ||| |||||||| ||||||| || || ||||| |||| || ||| | ||| Sbjct 51743 TTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTCGCGTCCATCTTCTGGTTGAAG 51802 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||||||||||| || ||| |||||||||||||||| | |||||||| Sbjct 51803 AAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGC 51862 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC- 117228 |||| |||||| ||||| |||||||| || | || | | | | | | Sbjct 51863 ATGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCT-CAACAACAAGCCATCAAACCA 51921 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || || ||| ||||||| || || | |||||||||| || ||||| || || Sbjct 51922 GGTTGTTGAAGACATCATCACCGAGGCCGTTGTCATCGAGCAGGAGTTTCTCACAGACGC 51981 Query 117289 GCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 || || ||||| || || ||| | || || || | |||| || |||||||||||| Sbjct 51982 CCTCCCATGTGCG-CTCCTCGGAATGAA-CGCCAAGCTCATGTGCCAGTACATCGAGTTC 52039 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||||||| | || || || | || | | | |||||||||||| | | ||||| Sbjct 52040 GTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCCACAAACCCC 52099 Query 117407 CTGGACTTTATGAACCTCATCTCC 117430 | ||||||||| | ||||||| Sbjct 52100 TTCGACTTTATGGAGAACATCTCC 52123 >seq3230 Length=199858 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || |||||| | || || || | | Sbjct 170329 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTGGAGTCGTCG 170388 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| |||||||| ||| ||||||| Sbjct 170389 GACACCATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 170448 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| || || || |||| ||||| ||| |||||||||| Sbjct 170449 CAGCGATTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACGCTCTCCGACTACAAC 170508 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 170509 ATCCAGAAGGAATCGACTCTCCATCTCGT 170537 Score = 116 bits (128), Expect = 4e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||| || | |||||||| || ||||||| ||| || || Sbjct 170185 AAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGAAAG 170244 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||||||||||| |||||||||||||||||||||| |||| || || Sbjct 170245 CAGCTTGAGGATGGGCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 170304 Query 40894 CTAGTGTTGCGC 40905 | ||| | ||| Sbjct 170305 TTGGTGCTCCGC 170316 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || ||||| ||||| || ||||| | || || ||| | | Sbjct 170557 ATGCAAATATTCGTCAAGACACTCACCGGCAAGACGATCACACTGGAAGTTGAATCATCA 170616 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| || || ||||| |||| || Sbjct 170617 GACACGATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGAATCCCACCGGATCA 170675 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| ||||| || |||| || || || || ||||| Sbjct 170676 ACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAA 170735 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| ||| ||||| Sbjct 170736 CATTCAGAAGGAGAGCACCCTGCA 170759 >seq2882 Length=147932 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| |||| || || | |||||| | | Sbjct 6766 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATC 6707 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | || || ||||| ||||| ||||||| || ||| | Sbjct 6706 GACAACG-TCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATT 6648 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || || || || || | || ||||| | ||||||||||||||| || Sbjct 6647 GATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATCCAAAA 6588 Query 40878 GG 40879 || Sbjct 6587 GG 6586 >seq2320 Length=314285 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || |||||||| ||||||| || || || |||| ||| ||||| || || || Sbjct 232792 GACAAGGAAGGCATCCCACCGGACCAACAGCGCCTGATCTTCGCCGGCAAGCAACTCGAG 232733 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | |||||||| |||||||||||||||||||||| | || || || Sbjct 232732 GATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCA 232683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195544998480