Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3230 136 3e-27
seq2320 89.7 4e-13
>seq3230
Length=199858
Score = 136 bits (150), Expect = 3e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||||| || ||||| || || |||||||| ||||| | |||||| ||||||
Sbjct 170310 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCCTC 170251
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| ||||| ||| ||||||| |||||||| || ||||| |||||||||||||||
Sbjct 170250 AAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 170191
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | |||| ||| |||| | ||||||||| | || | || ||
Sbjct 170190 AATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGACCTCAAGCGTGATGGTCTT 170131
Query 118709 GCCGGTCA 118716
|| ||||
Sbjct 170130 TCCAGTCA 170123
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || || || || || |||||||| ||| | ||||| || ||||| ||
Sbjct 170531 TGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCTTCGAGTTGC 170472
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| || ||| |||| | ||||| || || || || |||||||||||||| || ||
Sbjct 170471 TTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 170412
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
||||| | |||| |||||||| ||| ||||| | ||| | ||| ||||||||
Sbjct 170411 GACTTAACATTGTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCGGTG 170352
Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || ||||||||
Sbjct 170351 AGGGTCTTGACGAAGATCTGCAT 170329
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||| || |||||||||||||| | || || |||||
Sbjct 170766 CACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGTGTCCGGCCGTCCTC 170707
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| ||||||| ||||| ||||| || || || || |||||||||
Sbjct 170706 AAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGGATTCCTTCCTTGTCTTG 170647
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707
||| || || || | |||| ||||| | || | || || || | || | ||| |
Sbjct 170646 AATCTTGGACTTGACGTTGTCGATCGTGTCTGATGAT-TCAACTTCCAGTGTGATCGTCT 170588
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||||| || || || || || || |||||
Sbjct 170587 TGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557
>seq2320
Length=314285
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| ||| | ||||| |||||||
Sbjct 232677 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 232736
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|| || || || ||| |||| || ||||| || || || || ||||| |||||||||||
Sbjct 232737 AGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGGATGCCTTCCTTGTCTGT 232795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433810979717716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |