Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3230 113 3e-20 >seq3230 Length=199858 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||| ||| || |||| || | |||||||| ||||| Sbjct 170520 TTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAA 170461 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||| ||||| ||| | || ||||||||| ||||| ||| | || Sbjct 170460 GATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTAACATT 170401 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | ||| || || |||| ||||| || ||||||||||| || || || Sbjct 170400 GTCGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGAC 170341 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 170340 GAAGATCTGCAT 170329 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||||||| ||| | || || || ||||| |||||||| || || Sbjct 170784 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGA 170725 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | ||||||||| ||||| ||||| ||||| || || || Sbjct 170724 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGG 170665 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | | | | |||| || | ||||| || Sbjct 170664 GATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAAC 170605 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||||||||| || || || || || ||||| Sbjct 170604 TTCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| |||||||||||| || || | || Sbjct 170312 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCC 170253 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| ||||||||||| || | || ||||||||| Sbjct 170252 TCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 170193 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| | || ||||| || | ||||||||| Sbjct 170192 TGAATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGACCTCAAGCGTGATGGTC 170133 Query 34358 TTGCCGGT 34365 || || || Sbjct 170132 TTTCCAGT 170125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323057537782880