Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1589 116 8e-21 seq1618 91.5 3e-13 >seq1589 Length=144912 Score = 116 bits (128), Expect = 8e-21 Identities = 385/593 (65%), Gaps = 7/593 (1%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| |||||||||| ||| || || || | || | |||||| Sbjct 46538 TACCAATACTTTGGATTCAAGACGCTGGAGAGATCATACCTTCTGAGGATCAACGGCAAG 46597 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | || || || || ||| | ||||| || ||||| || || ||| |||||| Sbjct 46598 GTTGCCGAGAGACCACAACAGATGATCATGCGTGTTGCTGTTGGCATCCACGGTGATGAC 46657 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGC-TGGATGACACATGCCAC 248996 || ||| | | ||||| |||| | ||| |||| | | |||||||| | Sbjct 46658 ATTGAGTCTGCCATTGAGACCTACAACTACATGTC-GAACAAGTACTTCACACATGCTTC 46716 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 || ||||| |||| |||||| || |||| ||||||| || ||||| || | | Sbjct 46717 GCCTACGCTGTTCAGCGCCGGAACACCCAACGCTCAGCTGGCATCCTGCTTCCTCATCGA 46776 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG-GCGAAGATTT 249115 |||| | || ||| | || ||||| || ||||| ||| || | | || | ||| | Sbjct 46777 CATGAAGGATGACAGCATTGATGGCATCTACGACAC-CTTGAAGACCTGCGCCATGATCT 46835 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 | || ||| ||||| ||||| ||| ||| | |||||| |||| || | |||| Sbjct 46836 CCAAGAACGCTGGCGGCATCGGACTCAACGTTCACCGCATCCGCGCGACTGGAGCATACA 46895 Query 249176 TCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCA 249235 ||| |||||||| || | ||| |||||||| | || || ||| | || Sbjct 46896 TCAGCGGTACAAACGGAACATCCAACGGTCTCGTACCCATGCTGCGTGTGTTTAACAACA 46955 Query 249236 CCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGG 249292 |||| | | | || |||||| ||| | ||| || | ||||||||||| | | Sbjct 46956 CCGCTCGCTACGTCGACCAGGGCGGCAACAAGCGACCTGGTGCTTTCGCCATGTACATCG 47015 Query 249293 AAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGC 249352 | |||||||| ||| | || ||| |||| | |||||| |||| || ||| Sbjct 47016 AGCCATGGCACGCAGATGTCTTCTCCTTCTTGGATCTCCGCAAGAACCACGGAAAGGAGG 47075 Query 249353 TCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 | | || || || | |||||||| || ||||| | || |||||||| Sbjct 47076 AGGTTCGTGCCCGCGATTTGTTCTACGGTCTCTGGGTGCCTGATCTGTTCATG 47128 >seq1618 Length=50030 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 ||||| || | ||| || | ||||||||||||||||||| |||||| ||||||||| Sbjct 12870 TGTCCACCATATAAGATCATCATCCTGGACGAGGCGGACAGCATGACACAGGACGCGCAG 12811 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 || | ||| | ||||||||||| | || | || || ||||||||| | ||| Sbjct 12810 AGTGCATTACGCAGGACGATGGAGACATATTCGAAGATCACACGGTTTTGCCTGATCTGC 12751 Query 254322 AACTACGTGTCGAAGATCAT 254341 || |||||| ||| |||||| Sbjct 12750 AATTACGTGACGAGGATCAT 12731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073715868217664