Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1655 122 1e-22 >seq1655 Length=66175 Score = 122 bits (134), Expect = 1e-22 Identities = 370/569 (65%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| ||||| |||||||| | || | ||||| || Sbjct 51891 AACAGCAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 51832 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || ||||| |||||||| || |||||||| || | ||| || ||||| |||||||||||| Sbjct 51831 AAGGTGAGGCCGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGATCCG 51772 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 || |||||||| || || | || |||||||| || || | | || | || Sbjct 51771 GAGAAGAAGATGCCCTCGATGGCGGCAAAGGCGATGAGACGGCAGGC--AAAGGTCGAGT 51714 Query 33753 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || ||| ||||| | ||||| || |||||||| | || || || | | Sbjct 51713 TCTTGTCGGAGATCCATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGT 51654 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | ||||| || ||||| || | || || || | | || |||||||| | | Sbjct 51653 CGATGGCGTTGAAGAGGTACGTGCGTTGCTTGGGCTCGCTGATGTATGTATCGATGAGGA 51594 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | || | || || || ||||| || || || || || |||||||| || | | Sbjct 51593 GGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGGG 51534 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||||| |||||||| ||| || || || || | || ||||| || ||||||| Sbjct 51533 CCTCGGGGATCTGCACCTCTCCACTGAAGCGCTCAATGAGGTTCTCATTGACGATTCCAT 51474 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT---- 34043 | ||| || || || |||| || || || || | ||||| | ||| Sbjct 51473 CGGAGGCAGCGAAGAAGGCCAGGACGTGAGAGATGAAGAAGCGCTCGTC-GTCGTTGAGG 51415 Query 34044 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 | || ||||| || | | ||| || || | ||| | || || | ||||| || || Sbjct 51414 CGCTTGTTCCAGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAG 51355 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGAT 34132 ||||| ||||| || ||||| | |||||| Sbjct 51354 GCCTCGGCCTTCTTGTACATTTGCCAGAT 51326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629788683499440