Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1655 120 3e-22
seq1589 100 3e-16
>seq1655
Length=66175
Score = 120 bits (132), Expect = 3e-22
Identities = 353/537 (66%), Gaps = 9/537 (2%)
Strand=Plus/Plus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591
||||||| | ||||| | || || | || || |||| ||| ||||| || |||||
Sbjct 51642 TCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGATGGA 51701
Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651
|| || | || | || |||||| ||||| |||| ||||| | || ||
Sbjct 51702 TCTCCGACAAGAACTCGACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAGGGCA 51761
Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCC 52710
| || || || || || ||| | || || | | || || | ||| | | ||||||
Sbjct 51762 TCTTCTTCTCCGGATCATTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGCCC 51820
Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770
|||||||| || ||||||| | || || || ||||| || |||||||| || || ||
Sbjct 51821 GGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCC 51880
Query 52771 TGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACAT 52829
|| || | || | | | | | || | || ||| | | || ||||||
Sbjct 51881 TGCCTGCTGTTCT----CCCACCTCAACAACAAGCCATCAAACCAGGTTGTTGAAGACAT 51936
Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTAT-CAT 52888
| | |||||||| | ||| || | |||||| | || ||||| | ||| | | |
Sbjct 51937 CATCACCGAGGCCGTTGTCATCGAGCAGGAGTTTCTCACAGACGCCCT-CCCATGTGCGC 51995
Query 52889 TGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGT 52948
| | || |||||||| | | |||||| ||||||||||||| || || ||| | ||
Sbjct 51996 TCCTCGGAATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCC 52055
Query 52949 TGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008
| || ||||| | | ||| |||| || || |||||||| |||||| | |
Sbjct 52056 TCCTGGCACTCGGCAACCAGAAGCACTACAACGCCACAAACCCCTTCGACTTTATGGAGA 52115
Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065
|||| || |||| |||||||| ||||| ||||||| ||||| ||||| ||| |||
Sbjct 52116 ACATCTCCCTCGGAGGCAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTACCAAA 52172
>seq1589
Length=144912
Score = 100 bits (110), Expect = 3e-16
Identities = 267/403 (66%), Gaps = 10/403 (2%)
Strand=Plus/Minus
Query 154107 TTGCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGA 154166
||||||||||| | |||| || | | ||||| || || || |||||||||| |||
Sbjct 46983 TTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGA 46924
Query 154167 CCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCT---GTTGCGGCCTCGAACGCTGTT 154222
||| ||| || ||||||||| | || | |||| || ||| || | || ||
Sbjct 46923 CCGTTGGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGTCGCG----CGGATGCGGTG 46868
Query 154223 TACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTT 154282
||||| | ||| || ||||| ||| ||||||||||||||||| ||||| ||||
Sbjct 46867 AACGTTGAGTCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTGTC 46808
Query 154283 ATAGATACCACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAACATGAACTCATCTGCG 154341
||||| ||| |||||| || | ||| ||| || ||||| || || || ||| |
Sbjct 46807 GTAGATGCCATCAATGCTGTCATCCTTCAT-GTCGATGAGGAAGCAGGATGCCAGCTGAG 46749
Query 154342 GAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTACATCTTTGTGCTCA 154401
| || || ||||| |||| || || || || ||| | ||| | ||
Sbjct 46748 CGTTGGGTGTTCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAAGTACTTGTTCGACA 46689
Query 154402 AAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATAC 154461
| || || | || |||||| |||||||| || || ||| || | ||| | ||
Sbjct 46688 TGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCATCACCGTGGATGCCAACAGCAACAC 46629
Query 154462 GCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAAT 154504
||||| ||| ||||| || |||||||| || |||| ||
Sbjct 46628 GCATGATCATCTGTTGTGGTCTCTCGGCAACCTTGCCGTTGAT 46586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496041224461600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |