Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1655 120 3e-22 seq1589 100 3e-16 >seq1655 Length=66175 Score = 120 bits (132), Expect = 3e-22 Identities = 353/537 (66%), Gaps = 9/537 (2%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| | ||||| | || || | || || |||| ||| ||||| || ||||| Sbjct 51642 TCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGATGGA 51701 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || || | || | || |||||| ||||| |||| ||||| | || || Sbjct 51702 TCTCCGACAAGAACTCGACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAGGGCA 51761 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCC 52710 | || || || || || ||| | || || | | || || | ||| | | |||||| Sbjct 51762 TCTTCTTCTCCGGATCATTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGCCC 51820 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 |||||||| || ||||||| | || || || ||||| || |||||||| || || || Sbjct 51821 GGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCC 51880 Query 52771 TGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACAT 52829 || || | || | | | | | || | || ||| | | || |||||| Sbjct 51881 TGCCTGCTGTTCT----CCCACCTCAACAACAAGCCATCAAACCAGGTTGTTGAAGACAT 51936 Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTAT-CAT 52888 | | |||||||| | ||| || | |||||| | || ||||| | ||| | | | Sbjct 51937 CATCACCGAGGCCGTTGTCATCGAGCAGGAGTTTCTCACAGACGCCCT-CCCATGTGCGC 51995 Query 52889 TGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGT 52948 | | || |||||||| | | |||||| ||||||||||||| || || ||| | || Sbjct 51996 TCCTCGGAATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCC 52055 Query 52949 TGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008 | || ||||| | | ||| |||| || || |||||||| |||||| | | Sbjct 52056 TCCTGGCACTCGGCAACCAGAAGCACTACAACGCCACAAACCCCTTCGACTTTATGGAGA 52115 Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065 |||| || |||| |||||||| ||||| ||||||| ||||| ||||| ||| ||| Sbjct 52116 ACATCTCCCTCGGAGGCAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTACCAAA 52172 >seq1589 Length=144912 Score = 100 bits (110), Expect = 3e-16 Identities = 267/403 (66%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 154107 TTGCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGA 154166 ||||||||||| | |||| || | | ||||| || || || |||||||||| ||| Sbjct 46983 TTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGA 46924 Query 154167 CCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCT---GTTGCGGCCTCGAACGCTGTT 154222 ||| ||| || ||||||||| | || | |||| || ||| || | || || Sbjct 46923 CCGTTGGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGTCGCG----CGGATGCGGTG 46868 Query 154223 TACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTT 154282 ||||| | ||| || ||||| ||| ||||||||||||||||| ||||| |||| Sbjct 46867 AACGTTGAGTCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTGTC 46808 Query 154283 ATAGATACCACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAACATGAACTCATCTGCG 154341 ||||| ||| |||||| || | ||| ||| || ||||| || || || ||| | Sbjct 46807 GTAGATGCCATCAATGCTGTCATCCTTCAT-GTCGATGAGGAAGCAGGATGCCAGCTGAG 46749 Query 154342 GAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTACATCTTTGTGCTCA 154401 | || || ||||| |||| || || || || ||| | ||| | || Sbjct 46748 CGTTGGGTGTTCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAAGTACTTGTTCGACA 46689 Query 154402 AAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATAC 154461 | || || | || |||||| |||||||| || || ||| || | ||| | || Sbjct 46688 TGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCATCACCGTGGATGCCAACAGCAACAC 46629 Query 154462 GCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAAT 154504 ||||| ||| ||||| || |||||||| || |||| || Sbjct 46628 GCATGATCATCTGTTGTGGTCTCTCGGCAACCTTGCCGTTGAT 46586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496041224461600