Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1655 118 2e-21 >seq1655 Length=66175 Score = 118 bits (130), Expect = 2e-21 Identities = 368/569 (65%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || ||||| ||| ||||| |||||||| | || || |||||||| Sbjct 51891 AACAGCAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 51832 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || ||||| |||||||| || |||||||| || | ||| || |||||||| ||||| || Sbjct 51831 AAGGTGAGGCCGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCGAATGATCCG 51772 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--- 50127 || |||||||| || || | ||||||||||| | || | || | | | | Sbjct 51771 GAGAAGAAGATGCCCTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTCGAGTTC 51712 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 |||| ||||| | ||||| || |||||||| | || || || | || Sbjct 51711 TTGTCGGAGATCCATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCG 51652 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||||| || ||||| || | || || || | | || |||||||| | || Sbjct 51651 ATGGCGTTGAAGAGGTACGTGCGTTGCTTGGGCTCGCTGATGTATGTATCGATGAGGAGG 51592 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || | || || || ||||| || || || || || |||||||| || | ||| Sbjct 51591 GAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGGGCC 51532 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| |||||||| ||| || || || ||| | || ||||| || ||||| || Sbjct 51531 TCGGGGATCTGCACCTCTCCACTGAAGCGCTCAATGAGGTTCTCATTGACGATTCCATCG 51472 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA------ATGTTTTTCGTTGGGTGTT 50421 ||| || || || |||| || || || || | | |||||| | Sbjct 51471 GAGGCAGCGAAGAAGGCCAGGACGTGAGAGATGAAGAAGCGCTCGTCGTCGTTGAG---G 51415 Query 50422 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 50481 | || ||||| || | | ||| || || | ||| | || || | ||||| || || Sbjct 51414 CGCTTGTTCCAGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAG 51355 Query 50482 GCCTCTGCCTTTTTATACATATTCCAGAT 50510 ||||| ||||| || ||||| | |||||| Sbjct 51354 GCCTCGGCCTTCTTGTACATTTGCCAGAT 51326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718235822483720