Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1655 286 5e-72 seq1589 159 5e-34 >seq1655 Length=66175 Score = 286 bits (316), Expect = 5e-72 Identities = 599/878 (68%), Gaps = 31/878 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| ||||||| || ||||| | ||| ||| |||||||| Sbjct 51326 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATCGATCTG 51385 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | || | | || ||||| || || || Sbjct 51386 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCT 51445 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 ||| | |||||||||| || | |||||||||||||||||| || || || |||| || Sbjct 51446 CACGTCCTGGCCTTCTTCGCTGCCTCCGATGGAATCGTCAATGAGAACCTCATTGAG-CG 51504 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| | |||| || || || |||| ||||| ||||| |||||||||||||| Sbjct 51505 CTTCAGTGGAGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAAATCATGAT 51564 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC--- 125314 |||||| | ||||| || | ||||| || || || | ||||| |||| || Sbjct 51565 GGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGATACATACATCAGCGAGCCCAA 51624 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 |||||| | || ||||| ||||| ||||||| | || | || ||||| ||||| Sbjct 51625 GCAACGCACGTAC---CTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGC 51681 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | | |||| | | || |||||| ||| | || || | | ||| | | || | || Sbjct 51682 TGACTGGGCGCTGCGATGGATCTCCGACAAGAACTCGACCTTTGCCTGCCGTCTCATCGC 51741 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || |||||| | |||||||||||||| || || || ||| ||||||| ||| | || Sbjct 51742 CTTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTCGCGTCCATCTTCTGGTTGAA 51801 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || ||||||||||| || || | |||||| | || || || |||||||| Sbjct 51802 GAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGG 51861 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAGAT 125613 | | ||| ||||| ||| || ||||| || || | || | | | || | Sbjct 51862 CATGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACC--TCAACAACAAGCCATCA-AA 51918 Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 |||| | || | | ||||| | ||||| ||||| || || || ||||||| Sbjct 51919 CCAG-GTTGTTGAAGACATCA------TCACCGAGGCCGTTGTCATCGAGCAGGAGTTTC 51971 Query 125674 TAACCGAATCCCTACC-GGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 | || || |||| || || || | | || |||||| |||||| |||||| ||||| Sbjct 51972 TCACAGACGCCCTCCCATGTGCGC-TCCTCGGAATGAACGCCAAGCTCATGTGCCAGTAC 52030 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTACAAC 125789 || ||||| || || || ||||| || | | | || || ||| |||||| Sbjct 52031 ATCGAGTTCGTCGCCGACCGTCTCCT---CCTGGCACTCGGCAACCAGAAGCACTACAAC 52087 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 |||| || ||||| || || ||| | ||| || || | || || |||||||| ||| Sbjct 52088 GCCACAAACCCCTTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAACTTCTTC 52147 Query 125850 GAGAAGAAGGTCAGCGAGTAC--AAACGCTACGGTGTC 125885 |||||| ||| |||| ||| ||| || ||||||| Sbjct 52148 GAGAAGCGTGTCGGCGACTACCAAAAGGC--CGGTGTC 52183 >seq1589 Length=144912 Score = 159 bits (176), Expect = 5e-34 Identities = 331/485 (68%), Gaps = 6/485 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || || || || ||| | ||| | ||| | || || |||||||| || Sbjct 46973 CAGGGCGGCAACAAGCGACCTGGTGCTTTCGCCATGTACATCGAGCCATGGCACGCAGAT 47032 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||| | || | ||||| ||| || || |||| || ||| | || Sbjct 47033 GTCTTCTCCTTCTTGGATCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGCGAT 47092 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| || | ||||||||||| ||| ||||||||||||| || | | | | || Sbjct 47093 TTGTTCTACGGTCTCTGGGTGCCTGATCTGTTCATGAAGCGTGTTGA-GCAGAACACCAC 47151 Query 97056 -TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114 |||| | |||||||| || || ||||||||| | ||| || |||| ||||| Sbjct 47152 TTGGACTTTGATGTGCCCTCACGAGTGCCCCGGTCTGGCTGATGTCTACGGCGCTGAGTT 47211 Query 97115 TGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCAC 97173 |||| |||| | ||||||| |||||| | |||||||| |||| || | Sbjct 47212 CGAGGAGCTGTACGAGCGATACGAGCGTGAGGGCAAGGGTCGTGAGAC-AGTCCGCGCTC 47270 Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| || ||| | |||||| | ||||||| ||||| || || || ||||| ||| Sbjct 47271 -AGAAGCTCTGGTACGCCATCCTCGAGGCTCAGACCGAGACCGGCACGCCATACATCCTC 47329 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 |||||||| | | || |||| |||||||| ||||||| |||||| ||||| Sbjct 47330 TACAAGGACGCTGCCAACGGCAAGAGCAACCAGAAGAACTTGGGGACCATCCGCAGCTCC 47389 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 || || ||||| || || | |||||| | |||| || ||| || || ||| || Sbjct 47390 AACCTCTGCACCGAGATCATCGAGTACACTGCTCCTGATGAGGTCGCCGTGTGCAACCTT 47449 Query 97353 GCATC 97357 ||||| Sbjct 47450 GCATC 47454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025176119480