Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1589 161 9e-35 seq1655 158 1e-33 seq3230 102 8e-17 seq2320 98.7 9e-16 >seq1589 Length=144912 Score = 161 bits (178), Expect = 9e-35 Identities = 919/1449 (63%), Gaps = 41/1449 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| |||||||| || | ||||||||| | || | ||| ||| | || Sbjct 48027 TTGACAACCTGGAACTCGCCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGGC 47968 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||| ||| || | ||| | ||| || |||||| || || Sbjct 47967 TCGAAGCACTCGTTGAAACCCATGATCTGCGAGGTGGATGCAGTCGGCATGGGAGCGACG 47908 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | ||||||| ||| | |||| || | |||| ||||| Sbjct 47907 AGGAGCGAGTTGCGAACACCGTGCTCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCCAG 47848 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || ||| || |||| |||||||||||||||| | ||||| | |||| | Sbjct 47847 AGATCAGTGGGAGTCACACCCCACATGTCGTACTGAAGCTCGCCCTTGGAAACGGGAGAG 47788 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| || ||||| || | ||||| ||||| || |||| Sbjct 47787 CCCTCGTATGTCTCGTA--TGGTCCAAGCTTAGCAGCGAGATCGCATGAAGCGGTGAGAG 47730 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | || ||| || |||||| || || |||||||| | || ||| ||| Sbjct 47729 CAGCGTGATAGATGGTCTCGAAGATCTGAATGTTGAGCTGGCGAGCCTCAGGAGAGTCGA 47670 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | ||||||||||| | ||||||||||| || || | | || | |||||||| | Sbjct 47669 AAGGCATGCGCAGAGCCAAGAAAGCATCGGCAAGACCGTTGACACCGAGACCGATGGGAC 47610 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGATAATT 145534 | || | ||||||| | | ||| || | | || || | || ||||| || Sbjct 47609 GGTGACGGAAGTTGCTCTTGCGAGCCT-CTGGCACTGGGTAGTGGTTGACCTCGATGATC 47551 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA 145594 || |||||||| || | || | || | | ||| |||||||| || || Sbjct 47550 TTGTTCAAGTTCTTGGTGACGGTTTGAGTGACCTGGTGGAGCTTGTCAAAGTCGAAACGC 47491 Query 145595 GCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTC 145654 | | |||| | | || || | || ||||| || || | || || || || | Sbjct 47490 TCGTTCTCAATGTCGACGTAGGTGGGGAGGGCGAGAGATGCAAGGTTGCACACGGCGACC 47431 Query 145655 TCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCC 145714 || || | | |||| | | |||||||| ||| | ||| | |||||| ||| Sbjct 47430 TCATCAGGAGCAGTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTCCCC 47371 Query 145715 AGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCA 145774 | || | ||| || || || | |||| |||||||||||||| ||||| || ||| Sbjct 47370 AAGTTCTTCTGGTTGCTCTTGCCGTTGGCAGCGTCCTTGTAGAGGATGTATGGCGTGCCG 47311 Query 145775 GTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACCTGCTGCT 145832 ||||| ||| | ||| | ||| || || || | ||| || || || || Sbjct 47310 GTCTCGGTCTGAGCCTCGAGGATGG--CGTACCAGAGCTTCTGAGCGCGGACTGTCTCAC 47253 Query 145833 GGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAAT 145892 | |||||| |||||| | ||| |||||||| ||| | | |||||| || Sbjct 47252 GACCCTTGCCCTCACGCTCGTATCGCTCGTACAGCTCCTCGAACTCAGCGCCGTAGACAT 47193 Query 145893 CGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGC 145952 | | ||| ||||| |||| || || ||||||| | ||| | ||| | || | Sbjct 47192 CAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAGTCCAAGTGGTGTTCTGCTCAACAC 47133 Query 145953 GCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCT 146012 ||| ||| |||| ||| |||||||| || |||| | ||| ||||| || | | ||| Sbjct 47132 GCTTCATGAACAGATCAGGCACCCAGAGACCGTAGAACAAATCGCGGGCA---CGAACCT 47076 Query 146013 CAGCAC--CCATGTTTC--GCT----TCAAATTAAGCACACTATAGATGTCCGCGTGCCA 146064 | | || || ||| || || || ||| | | ||| || |||||||| Sbjct 47075 CCTCCTTTCCGTGGTTCTTGCGGAGATCCAAG-AAGGAGA----AGACATCTGCGTGCCA 47021 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACG 146121 || || || || | ||||| || || ||| ||| || |||||||| |||| || Sbjct 47020 TGGCTCGATGTACATGGCGAAAGCACCAGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCG 46961 Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181 | |||||||||| || |||| |||||| ||| ||| ||| | ||||| ||| Sbjct 46960 AGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTTGGATGTTCCGTTTGTACC 46901 Query 146182 GTTTAT-TCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGT 146240 | | || | || | | | | ||| | || ||||| || | |||| ||||| ||| Sbjct 46900 GCTGATGTATGCTCCAGTCGC-GCGGATGCGGTGAACGTTGAGTCCGATGCCGCCAGCGT 46842 Query 146241 ACTTGGATATAGCGGCGCAG-TCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GC 146297 |||||| || ||||||| || | || || ||||||||||| |||||||| || | Sbjct 46841 TCTTGGAGATCATGGCGCAGGTCTTCAAG-GTGTCGTAGATGCCATCAATGCTGTCATCC 46783 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357 ||| ||| ||| || ||||| || || ||| || | || || || || ||||| Sbjct 46782 TTC--ATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGTTCCGGCGCTGAACA 46725 Query 146358 ACGTCGGGCTCGCGTGCGTAAA--CATTTTTCGGCTCATCATCCGATACGTTTCGATAGC 146415 ||| || || || || || || |||| ||| || || || || || Sbjct 46724 GCGTAGGCGAAGCATGTGTGAAGTACTTGTTCG--ACATGTAGTTGTAGGTCTCAATGGC 46667 Query 146416 GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCG 146475 | |||||| || || || ||||| | ||| || ||||||| ||| ||||| || | Sbjct 46666 AGACTCAATGTCATCACCGTGGATGCCAACAGCAACACGCATGATCATCTGTTGTGGTCT 46607 Query 146476 CTCCGCCAC 146484 ||| || || Sbjct 46606 CTCGGCAAC 46598 >seq1655 Length=66175 Score = 158 bits (174), Expect = 1e-33 Identities = 348/515 (68%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | || ||||| | ||||||||| || |||||| | || | | || Sbjct 51659 ATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAACTCG 51718 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||| ||| | | |||||||| | |||||| |||| || || || Sbjct 51719 ACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCA 51778 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || || ||||||| | | || || | || | ||||||||||||| || || ||| Sbjct 51779 TTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGCCCGGCCTCACCTTCTCCAA 51837 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACAC 46322 |||||| || || || ||||||||| |||| || ||||| || || || || | | | Sbjct 51838 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTG--CTGTT-CTC 51894 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAG--CATGTTCAAGGAGGCGGTG 46380 | | | || |||||| | | || || ||| ||| ||| ||||| || Sbjct 51895 CCACCTCAACAACAAGCCATCAAAC--CAGGTTGTTGAAGACATCATCACCGAGGCCGTT 51952 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440 | ||| ||| |||||||| | || | ||| || || ||| || || || |||||||| Sbjct 51953 GTCATCGAGCAGGAGTTTCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCC 52012 Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAG 46500 || |||||| | ||||||||||| || || ||||| || ||| || || | | Sbjct 52013 AAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTCGGCAAC 52072 Query 46501 CCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGC 46560 | |||||| | |||| || || || || |||||| | ||||||||||| | ||| Sbjct 52073 CAGAAGCACTACAACGCCACAAACCCCTTCGACTTTATGGAGAACATCTCCCTCGGAGGC 52132 Query 46561 AAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| || || ||||| ||||| |||||||| || Sbjct 52133 AAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTA 52167 >seq3230 Length=199858 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | || |||||||| || |||||||| ||||| Sbjct 170327 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 170268 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||||| |||||||| || ||| |||| | ||||||||||| ||||| Sbjct 170267 AGGGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 170208 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 170207 ATGCCCTCCTTGTC 170194 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| ||||| || || | ||| |||||| |||||||||||||| Sbjct 170783 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 170724 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||| | ||||| || ||||| ||| Sbjct 170723 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 170664 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || || ||||| | || | || || | || || | Sbjct 170663 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAACT 170604 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || ||||| || ||||| Sbjct 170603 TCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557 >seq2320 Length=314285 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | |||||||||||| || |||||||| ||| Sbjct 232659 CCACCACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 232718 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || |||||||| ||| |||| | ||||| |||||||| ||| Sbjct 232719 AGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGG 232778 Query 131128 ATTCCTTCTTTGTCGGT 131144 || ||||| ||||| || Sbjct 232779 ATGCCTTCCTTGTCTGT 232795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471991128712320