Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3339 136 3e-27
seq3230 107 1e-18
seq2482 104 2e-17
>seq3339
Length=279783
Score = 136 bits (150), Expect = 3e-27
Identities = 204/290 (70%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
||| | |||||||||||||| ||| ||||||| | |||||||| || ||||| |||
Sbjct 238485 GACCCTTTCTACCGCTACAAGATGGAGCGCATCCAGTCTAAGGTCGAAGGAAAGGGTAAC 238426
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
|| || || |||||||| |||||| || | |||||| | ||||| ||||| |
Sbjct 238425 GGCATCAAGACCGTCATCGTCAACTTGAGCAACGTCGCTCAACAGCTCGCCCGCCCACCA 238366
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
| |||| || || || || || | ||| || || |||||||| | | || | |||
Sbjct 238365 AACTACGTGATCAAGTACTTTGGCTTCGAGCTGGGTGCTCAGACAAACATCGACCCCAAG 238306
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||| |||| ||| | ||||| | || | | |||||| ||||||| || ||
Sbjct 238305 GACGACCGCTGGATCATCAACGGCGCTCACGAAGCGAGCAAGCTTCAGGACTACCTCGAT 238246
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
||||| || |||||||||||| || ||| ||| | ||||| |||||
Sbjct 238245 GGCTTCATCAACAAGTTTGTGCTCTGCAAGGAGTGCAAGAACCCTGAGAC 238196
>seq3230
Length=199858
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|| || | || ||| | |||||| || || ||||||||||| ||||| |||||||||||
Sbjct 170783 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 170724
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || |||| || | || || ||||| || || ||||| |||||||| | |||
Sbjct 170723 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 170664
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| ||||| ||| || ||| || || | || || ||| |||||||
Sbjct 170663 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAACT 170604
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||| || || || || || | || || |||||||| |||||
Sbjct 170603 TCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557
>seq2482
Length=8611
Score = 104 bits (114), Expect = 2e-17
Identities = 84/102 (82%), Gaps = 5/102 (5%)
Strand=Plus/Plus
Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949
|| || ||||||||||||||| ||| | ||||||||||||||||||||||| | |
Sbjct 3456 TTCTACTAAGCCCGTTCCCTTAGCTATAGTTTCGCTAGATAGTAGATAGGGATAGTAGGA 3515
Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||||||||| || || ||||| ||||||||||| ||||
Sbjct 3516 ATCTCGTTAATCTATTTATACGCGTTACTAATTAGATAACGA 3557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334932206193263
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |