Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3339 136 3e-27 seq3230 107 1e-18 seq2482 104 2e-17 >seq3339 Length=279783 Score = 136 bits (150), Expect = 3e-27 Identities = 204/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||| | |||||||||||||| ||| ||||||| | |||||||| || ||||| ||| Sbjct 238485 GACCCTTTCTACCGCTACAAGATGGAGCGCATCCAGTCTAAGGTCGAAGGAAAGGGTAAC 238426 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || |||||||| |||||| || | |||||| | ||||| ||||| | Sbjct 238425 GGCATCAAGACCGTCATCGTCAACTTGAGCAACGTCGCTCAACAGCTCGCCCGCCCACCA 238366 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | |||| || || || || || | ||| || || |||||||| | | || | ||| Sbjct 238365 AACTACGTGATCAAGTACTTTGGCTTCGAGCTGGGTGCTCAGACAAACATCGACCCCAAG 238306 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| |||| ||| | ||||| | || | | |||||| ||||||| || || Sbjct 238305 GACGACCGCTGGATCATCAACGGCGCTCACGAAGCGAGCAAGCTTCAGGACTACCTCGAT 238246 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 ||||| || |||||||||||| || ||| ||| | ||||| ||||| Sbjct 238245 GGCTTCATCAACAAGTTTGTGCTCTGCAAGGAGTGCAAGAACCCTGAGAC 238196 >seq3230 Length=199858 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||| | |||||| || || ||||||||||| ||||| ||||||||||| Sbjct 170783 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGAA 170724 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || ||||| || || ||||| |||||||| | ||| Sbjct 170723 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 170664 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || ||| || || | || || ||| ||||||| Sbjct 170663 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAACT 170604 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| || || || || || | || || |||||||| ||||| Sbjct 170603 TCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557 >seq2482 Length=8611 Score = 104 bits (114), Expect = 2e-17 Identities = 84/102 (82%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949 || || ||||||||||||||| ||| | ||||||||||||||||||||||| | | Sbjct 3456 TTCTACTAAGCCCGTTCCCTTAGCTATAGTTTCGCTAGATAGTAGATAGGGATAGTAGGA 3515 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||| || || ||||| ||||||||||| |||| Sbjct 3516 ATCTCGTTAATCTATTTATACGCGTTACTAATTAGATAACGA 3557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334932206193263