Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3230 111 1e-19
seq2882 89.7 4e-13
>seq3230
Length=199858
Score = 111 bits (122), Expect = 1e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || | ||||| | || |||||||||||
Sbjct 170329 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTGGAGTCGTCG 170388
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || ||||| || ||||
Sbjct 170389 GACACCATCGA--CAATGTTAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 170446
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || || |||||||| ||| | ||||| | |||||| | ||| ||||
Sbjct 170447 AACAGCGATTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGCACGCTCTCCGACTACA 170506
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || ||||| || || ||| | || ||
Sbjct 170507 ACATCCAGAAGGAATCGACTCTCCATCTCGTCCT 170540
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| || ||||| | ||||| || | |||||| | ||||| || || ||
Sbjct 170557 ATGCAAATATTCGTCAAGACACTCACCGGCAAGACGATCACACTGGAAGTTGAATCATCA 170616
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | || | ||| ||||| ||||| || ||||| || ||
Sbjct 170617 GACACGATCGACAACGTCAAGTCCAAGATTCA-AGACAAGGAAGGAATCCCACCGGATCA 170675
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || |||||||| || | || || | || || | ||||||||
Sbjct 170676 ACAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCTGATTACAA 170735
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
||||| || || ||| || || || ||||| | || | ||||||
Sbjct 170736 CATTCAGAAGGAGAGCACCCTGCACTTGGTGCTCCGTCTGCGTGGAGGA 170784
>seq2882
Length=147932
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| | || || || ||||||| |||| ||||||||||| ||||| |||
Sbjct 6766 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGACACCATC 6707
Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
|| | ||| || ||| || || || || || ||||| ||||||||||| |
Sbjct 6706 GACAACGTCAAGAGCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATTG 6647
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186
|| || ||||| || ||| | || |||| || || || |||| ||||| || |||||
Sbjct 6646 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATCCAAAA 6588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433308602207495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |