Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1655 118 2e-21 seq2425 107 4e-18 seq2829 89.7 1e-12 >seq1655 Length=66175 Score = 118 bits (130), Expect = 2e-21 Identities = 270/401 (67%), Gaps = 8/401 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||| | || ||||| |||||| |||||||||||||||||| Sbjct 52149 TCGAAGAAGTTGGTTTTGCCTCCGAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTTGTG 52090 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | | ||| ||||| | || || ||||| || || ||||| | Sbjct 52089 GCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAGGAGGAGACGGTCGGCGACGAACTCGATG 52030 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || | | |||||| || | | ||| || | || || || Sbjct 52029 TACTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGCACATGGGAGGGCGTCTGTGAGA 51970 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAG---AGAC 251799 || |||| ||| || |||| ||||| | | || ||||| | || | || Sbjct 51969 AACTCCTGCTCGATGACAACGGCCTCGGTGATGA-TGTCTTCAAC--AACCTGGTTTGAT 51913 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 ||||||| | || | ||| |||| || | | || | ||||| |||||||| Sbjct 51912 GGCTTGTTGTTGAGGTGGGAGAACAGCAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCA 51853 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||||| | ||||| ||||| | ||||| ||| | | |||| Sbjct 51852 CGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCACGCTTCTTCAACCAG 51793 Query 251920 AAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGA 251959 ||||| | ||| || ||||| ||||| | | ||||||| Sbjct 51792 AAGATGGACGC-GAATGATCCGGAGAAGAAGATGCCCTCGA 51753 >seq2425 Length=97746 Score = 107 bits (118), Expect = 4e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 |||| |||||||| || || || || || || || ||||||||||| |||||||||| || Sbjct 62149 TCATCGGACCCAACGGAGCCGGAAAATCAACTCTGATCAAAGTCCTCACTGGCGAGA-CC 62091 Query 280234 AGGCCACTG-AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 ||||| | |||| || |||||| |||||| |||| || | || || ||| Sbjct 62090 GTGCCACAGCAGGGCAGAGTCGAGAAGCACCCCAACTTGCGTATCGGGTATATCAAGCAG 62031 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||| | | ||| |||||| ||| |||| | |||||| ||||||||| | || ||| Sbjct 62030 CACGCCCTGGAGCACGTCGAGATGCACATGGAGAAGACTCCCAACCAATACCTGCAATGG 61971 Query 280353 CGCTATGC 280360 || || || Sbjct 61970 CGTTACGC 61963 >seq2829 Length=486301 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||| || |||| ||| | || || |||| ||||| |||| ||| Sbjct 336447 GGCGAGGATCTCTGCAACTGCACATTCAACTTGGCCTACGGTGCCAAGATCTTGCTCAAC 336506 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | ||||||||||| | || || ||||| |||| ||||| || | Sbjct 336507 CAGACCCATCTCCGCCTCAAGCGTGGCCAGCGCTACGGTCTGCTCGGACCCAACGGCTCC 336566 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||||| ||||||||||| |||| ||| | || || ||||| || ||| Sbjct 336567 GGCAAGACGACTCTCATGCGCGCCATCAACAACGAGCAGGTCGAGGGTTTTCCCAA-GCA 336625 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCAC 279583 ||||| | ||| || || || ||||||||| | ||| | || | | || | || Sbjct 336626 GAGCGAGGTCAAGACTGTTTACGTCGAGCACGACTTGGACGCTGCTGACACTGAGATGAC 336685 Query 279584 TGTGTTCGACT 279594 ||| |||||| Sbjct 336686 TGTCATCGACT 336696 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | ||||| || ||||| ||||| || ||||| || || |||| ||||| Sbjct 337262 CTCCCGTATCGCGGTCATCGGTCCCAACGGTGCTGGCAAGTCGACTCTTGTCAATGTCCT 337321 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGG 280278 ||| || ||| | || ||| | |||| ||| | |||| ||||| || || | Sbjct 337322 GACCGGTGAG-CTCATACCAACCAAGGGTGACGTCTACCAGCACGAGAACATCCGTATCG 337380 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||| || |||||||||||| ||| ||||| ||||||| |||| ||| || | Sbjct 337381 CCTACATCAAGCAGCACGCTTTCGCCCATATCGATCACCACCTCGACAAGACCCCATCCG 337440 Query 280339 AATACATTCAGTGGCG 280354 | |||||||| ||||| Sbjct 337441 AGTACATTCAATGGCG 337456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027788429678993