Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3230 199 7e-46 seq1655 192 1e-43 seq2882 134 3e-26 seq2320 109 1e-18 >seq3230 Length=199858 Score = 199 bits (220), Expect = 7e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | |||||||| || ||| ||| || || ||||| ||||| || Sbjct 170784 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCAGA 170725 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||||| || || || | |||||| |||||||| ||||| | ||||| || ||||| Sbjct 170724 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGTGG 170665 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||||||||||||||| | ||||||| ||||| ||||||| |||||| || Sbjct 170664 GATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCAAC 170605 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || ||||| |||||||||||||| ||||| Sbjct 170604 TTCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || || || || || |||||||| || |||||| Sbjct 170555 CCACCACGAAGGCGGAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAG 170496 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || | || |||||||| || ||| Sbjct 170495 AGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGGGGA 170436 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || ||||||||||| | || || || Sbjct 170435 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTGTCCGACGACTCCACC 170376 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || || ||||||||||||||||| |||||||| Sbjct 170375 TCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 170329 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || |||||||| || |||||||| || ||| | Sbjct 170327 CCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 170268 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| |||||||| ||||| | || ||||| || ||| Sbjct 170267 AGGGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 170208 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| ||| || |||||||| || | || || || Sbjct 170207 ATGCCCTCCTTGTCTTGAATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCGACC 170148 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| ||||| || Sbjct 170147 TCAAGCGTGATGGTCTTTCCAGT 170125 >seq1655 Length=66175 Score = 192 bits (212), Expect = 1e-43 Identities = 579/870 (67%), Gaps = 33/870 (4%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||| ||||| || || || |||||||||||||| ||||| | Sbjct 52186 CATGACACCGGCCTTTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTTTTGCCTCC 52127 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 |||||| ||| |||||| ||||| |||||||| |||| | ||||| ||| || Sbjct 52126 GAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTTGTGGCGTTGTAGTGCTTCTGGTTGCC 52067 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 |||||| || | ||||| || ||||||||||||||||||| ||| || | | ||| Sbjct 52066 GAGTGCCAGGAGGAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTT 52007 Query 10115 CATGCCAATCATGCG-GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||| || | | ||| || |||| |||||| | || |||| ||| || | || | Sbjct 52006 CATTCCGAGGA-GCGCACATGGGAGGGCGTCTGTGAGAAACTCCTGCTCGATGACAACGG 51948 Query 10174 CTTCCTCGACGATGCTCTT-TACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232 | || || |||| |||| || || | || ||||||| | ||| | || || Sbjct 51947 CCTCGGTGATGATG-TCTTCAACAACCTGGTTTGATGGCTTGTTGTTGAGGTGGGAGAAC 51889 Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 || || | || | ||| | ||||||||| ||| ||||| ||||||||| || Sbjct 51888 AGCAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAG 51829 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGA 10351 || ||||||||||| || || || || |||||| |||| ||| ||| || ||||| Sbjct 51828 GTGAGGCCGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGACGC-GAATGATCCGGA 51770 Query 10352 GAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTC 10408 || |||||| ||||| | | | |||||| ||| || || |||| | | || Sbjct 51769 GA--AGAAGATGCCCTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTCGAGTTC 51712 Query 10409 GCG-CGAAAAGTATTTCG-AG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 | || | | | ||| || ||||| | |||||||| | | | ||||| | || Sbjct 51711 TTGTCGGAGA-TCCATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTC 51653 Query 10466 GATAGCCTCGAAGAG---CTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAG 10522 ||| || | |||||| | || ||| || |||| || || | ||| | ||| Sbjct 51652 GATGGCGTTGAAGAGGTACGTGCGTTGCTTGGGCTCG--CT-GATGTATGTATCGATGAG 51596 Query 10523 CAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACG 10582 ||||||||| |||| ||||| | |||| | ||| || ||||||| || Sbjct 51595 GAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCG 51536 Query 10583 TGCCGAGGGG-TCCGTGACT-TCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 ||| |||| || | || ||| | | ||| | | |||||||| | || || Sbjct 51535 GGCCTCGGGGATCTGCACCTCTCCACTG--AAGCGCTCAATGAGGTTCTCATTGACGATT 51478 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 |||||| | | || |||||| | |||| ||| ||||||| |||||| || ||||| Sbjct 51477 CCATCGGAGGCAGCGAAGAAGGCCAGGACGTGAGAGATGAAGAAGCGCTCGTCGTCGTTG 51418 Query 10701 AG----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 || || || |||||| | ||||| | || | || |||||| ||||||| Sbjct 51417 AGGCGCTTGTT----CCAGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCA 51362 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 ||||| ||| |||||||||||||||| || Sbjct 51361 GAAAGAGGCCTCGGCCTTCTTGTACATTTG 51332 >seq2882 Length=147932 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || ||| || || | ||||| || | ||||| |||||||| || Sbjct 6588 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 6647 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || |||||||| ||||| || || ||||| || || ||||| ||||||| ||| Sbjct 6648 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCG 6707 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || |||||||||||||||||||| Sbjct 6708 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 6766 >seq2320 Length=314285 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || || ||||| || |||||||| || ||||| Sbjct 232659 CCACCACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 232718 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| || || | |||||||| ||||| Sbjct 232719 AGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGG 232778 Query 68355 ATGCCTTCCTTGTCT 68369 ||||||||||||||| Sbjct 232779 ATGCCTTCCTTGTCT 232793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921580086011560