Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1655 399 4e-106 seq1589 289 5e-73 >seq1655 Length=66175 Score = 399 bits (442), Expect = 4e-106 Identities = 607/852 (71%), Gaps = 14/852 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||||||||||||||| || ||| Sbjct 51326 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATCGATCTG 51385 Query 42360 GCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | | || || |||| || ||| || Sbjct 51386 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCT 51445 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | |||||||||||||| ||||| || || || |||||||||||||| | Sbjct 51446 CACGTCCTGGCCTTCTTCGCTGCCTCCGATGGAATCGTCAATGAGAACCTCATTGAGCGC 51505 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| |||||||||| | ||||| |||||||||||||| ||||| || || Sbjct 51506 TTCAGTGGAGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAAATCATGATG 51565 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| ||| ||| || || || | || |||||| || ||| Sbjct 51566 GAGAACATCCACTCCGAGACATACTCCCTCCTCATCGATACATACATCAGCGAGCCCAAG 51625 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 | || | || ||||| ||||| || | || || |||||| |||||||| ||| Sbjct 51626 CAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGTAAGAAGGCTGAC 51685 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 |||||||| |||||| | | || | | || || | | | || | ||||| Sbjct 51686 TGGGCGCTGCGATGGATCTCC-GACAAGAACTCGACCTTTGCCTGCCGTCTCATCGCCTT 51744 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | ||||| ||||||||||||||||||| || | ||||| |||||||||||| | ||| | Sbjct 51745 TGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTCGCGTCCATCTTCTGGTTGAAGAA 51804 Query 42776 G-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | ||| || |||||||| ||||||||||| ||||| |||||| | | |||||||| Sbjct 51805 GCGTGGTCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCA 51863 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | ||||| |||||||| |||||||| |||||||| ||||||| || || Sbjct 51864 TGCACACCGACTTCGCCTGCCTGCTGTTCTC---CCACCTCAACAACAAGCCATCAAACC 51920 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 || || | ||||||||| |||||||| | |||||| ||||||| ||||| | Sbjct 51921 AGGTTGTTGAAGACATCATCACCGAGGCCGTTGTCATCGAGCAGGAGTTTCTCACAGACG 51980 Query 42955 CGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 | || ||| ||| | || |||| |||||| | | ||||||||| |||||||| ||| | Sbjct 51981 CCCT-CCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTC 52039 Query 43014 GTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 |||||||||| |||||| || || || ||| | | ||||||| | | ||| Sbjct 52040 GTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAG-CACTACAACGCCACAAACCC 52098 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 |||||||||||||||||||||||| | | ||||| |||||||| ||||||||||| || Sbjct 52099 CTTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAACTTCTTCGAGAAGCGTGT 52158 Query 43133 CGCCGACTACCA 43144 || ||||||||| Sbjct 52159 CGGCGACTACCA 52170 >seq1589 Length=144912 Score = 289 bits (320), Expect = 5e-73 Identities = 927/1427 (65%), Gaps = 61/1427 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | ||||| || || ||||| ||||||| || || Sbjct 48028 GTTGACAACCTGGAACTCGCCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGG 47969 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| || |||| ||||||| ||| |||||||||||||| | || Sbjct 47968 CTCGAAGCACTCGTTGAAACCCATGATCTGCGAGGTGGATGCAGTCGGCATGGGAGCGAC 47909 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTG-GATGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 || || ||| | || |||||| || | ||| | |||| || |||||||| Sbjct 47908 GAGGAGCGAGTTGCGAACACCGTGC-TCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCC 47850 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 | ||| || | | | | ||||||||||| |||| ||| |||||| Sbjct 47849 A---------GAGATCAGTGGGAGTCACACCCCACATGTCGTACTGAAGCTCGCCCTTGG 47799 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCTC 244387 ||||| ||||||||| ||| ||| || || || | || || | || Sbjct 47798 AAACGGGAGAGCCCTCGTATGTCTCGTATGGTCCAA-GCTTAGCAGCGAGATCGCATGAA 47740 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || ||| || |||| |||||||||||||||||| |||| | | ||| |||| Sbjct 47739 GCGGTGAGAGCAGCGTGATAGATGGTCTCGAAGATCTGAATGTTGAGCTGGCGAGCCT-- 47682 Query 244448 CCGCAG-GT-GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | | || || ||| || |||| || || ||| | ||||| || || | || |||| Sbjct 47681 CAGGAGAGTCGAAAGGCATGCGCAGAGCCAAGAAAGCATCGGCAAGACCGTTGACACCGA 47622 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTTCGGGCACGGGGTAAAAGT 244562 |||||||| | ||| || |||| | | || || || ||||| ||||| || Sbjct 47621 GACCGATGGGACGGTGACGGAAGTTG---CTCTTGCGAGCCTCTGGCACTGGGTAGTGGT 47565 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || | ||||| | |||||| | ||| ||||| | | ||| | | ||| | Sbjct 47564 TGACCTCGATGATCTTGTTCAAGTTCTTGGTGACGGTTTGAGTGACCTGGTGGAGCTTGT 47505 Query 244623 GAAAGTCGTA---CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGG 244679 ||||||| | ||||| | ||| || |||| ||||| Sbjct 47504 CAAAGTCGAAACGCTCGTTCTCAATGTCGACGTAGGTGGG---------------GAGGG 47460 Query 244680 CGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGG 244739 ||| || |||||||| ||||| ||||| || | ||||||| || ||||||| Sbjct 47459 CGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGG 47400 Query 244740 TGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGG 244799 |||||||||| || |||||| |||| || || || ||| |||| ||||| | Sbjct 47399 TGCAGAGGTTGGAGCTGCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTGCCGTTGGCAG 47340 Query 244800 CGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCC 244859 ||||||||||||| ||| | ||| ||||||||| ||| || |||||| | || || Sbjct 47339 CGTCCTTGTAGAGGATGTATGGCGTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCGTACC 47280 Query 244860 AGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACA 244919 |||| | | ||| ||| ||| ||| |||||||||| |||||| || ||||| Sbjct 47279 AGAGCTTCTGAGCGCGGACTGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACA 47220 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGA 244979 | |||||||||| | ||| |||| || | || ||||||||| |||||||| | Sbjct 47219 GCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCA 47160 Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 | |||| | | | || || | || |||||| || || || | |||||| | | Sbjct 47159 AAGTCCAAGTGGTGTTCTGCTCAACACGCTTCATGAACAGATCAGGCACCCAGAGACCGT 47100 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 ||| | || | || | ||| ||| || |||||| | || ||||| ||| Sbjct 47099 AGAACAAATCGCGGGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGG 47040 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 ||||| || ||||||| ||||| ||||| | |||| || || || |||||||||| Sbjct 47039 AGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCGAAAGCACCAGGTCGCTTGTTGC 46980 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATG 245215 | |||||||| | | | |||||| ||| || | ||||| | || || | Sbjct 46979 CGCCCTGGTCGA----CGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGA 46924 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| || ||||| || || ||||||| || || | | | || ||| | || Sbjct 46923 CCGTTGGATGTTCCGTTTGTACCGCTGATGTATGCTCCAGT---CGCGCGGATGC-GGTG 46868 Query 245276 GAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTC 245331 || | || | ||||| |||| ||||||||| | ||||||| |||| | |||||| Sbjct 46867 AACGTTGAGTCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAGGTGTC 46808 Query 245332 TGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG 245391 ||||| || |||||||| |||||||| || || |||||||| | |||||| | Sbjct 46807 GTAGATGCCATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGC 46748 Query 245392 CTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAG 245451 ||||| | | | | ||||||| || || || || || ||||| | |||| | Sbjct 46747 GTTGGGTGTTCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAAGTACTTGTTCGACAT 46688 Query 245452 GAACCCGTACGTCTGGA--GCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | | ||| |||| | ||||| || |||| || |||||||| Sbjct 46687 GTAGTTGTAGGTCTCAATGGCAGA--CTCAATGTCATCACCGTGGAT 46643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944295843026480