Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04-
30] 3,673 sequences; 34,411,184 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3230 141 2e-28
seq2882 120 7e-22
seq1655 118 3e-21
>seq3230
Length=199858
Score = 141 bits (156), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || |||||||| | || ||| || ||||| || ||||||| |
Sbjct 170555 CCACCACGAAGGCGGAGGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAG 170496
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| |||||||| | ||| || || |||||||||| |||||||| || |||
Sbjct 170495 AGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGG---TCCGGG 170439
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| |||| || || || || || | || ||| ||
Sbjct 170438 GGAATGCCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTGTCCGACGACTCC 170379
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 170378 ACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 170329
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
||||| || || || | || || | || | ||||| || || || || || || ||
Sbjct 170786 TGTCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAATCA 170727
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || || ||||| || | || || || |||||||| || ||||||||| |
Sbjct 170726 GAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCCGGT 170667
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||||||||| || || || || || | || ||||| || || | || |||||
Sbjct 170666 GGGATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATCGTGTCTGATGATTCA 170607
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || ||||||||||| ||||| || |||||||||||||| |||||
Sbjct 170606 ACTTCCAGTGTGATCGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 170557
>seq2882
Length=147932
Score = 120 bits (132), Expect = 7e-22
Identities = 136/180 (76%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||| || |||||| || || || || || || | ||| ||||| |||||||||
Sbjct 6588 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 6647
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404
| |||||||| ||||||||| || ||||||||||| || ||| || ||||| ||
Sbjct 6648 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTC 6706
Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | ||| ||| || || ||||| ||||| ||||| || || || |||||||||||
Sbjct 6707 GATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 6766
>seq1655
Length=66175
Score = 118 bits (130), Expect = 3e-21
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190
||||| |||||||| | | |||| ||||| ||| | |||||| || || |||||
Sbjct 51977 GACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAGTACATCGAG 52036
Query 269191 TTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250
||||| || || ||| || || ||||||||| | |||| ||||| | | ||
Sbjct 52037 TTCGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAACGCCACAAAC 52096
Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310
||||||| ||||||||| || || |||| ||| || || ||||||||||| ||||||
Sbjct 52097 CCCTTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAACTTCTTCGAGAAGCGT 52156
Query 269311 GTCAGCGACTATCAA 269325
||| ||||||| |||
Sbjct 52157 GTCGGCGACTACCAA 52171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179598885095294
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |