Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1655 141 2e-28 >seq1655 Length=66175 Score = 141 bits (156), Expect = 2e-28 Identities = 555/864 (64%), Gaps = 23/864 (3%) Strand=Plus/Plus Query 242888 ATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAG 242947 |||| | || ||| | ||||| |||||||| | ||| | || |||||| ||||||| Sbjct 51318 ATCCATAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGA 51377 Query 242948 TTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATT 243007 | |||| | || | ||||||| | || ||||| |||||||| || | Sbjct 51378 TCGATCTGTCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCT 51437 Query 243008 TCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGC 243067 ||||| ||| | || | || ||||| | ||||||||| || || | || || || | Sbjct 51438 TCATCTCTCACGTCCTGGCCTTCTTCGCTGCCTCCGATGGAATCGTCAATGAGAACCT-C 51496 Query 243068 A--GACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCA 243125 | || | ||| |||| || || | | || ||||| || || || | || ||| Sbjct 51497 ATTGAGCG-CTTCAGTGGAGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCA 51555 Query 243126 AACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTC 243185 || | | || ||||| || || ||| | || || ||||| | || || Sbjct 51556 AATCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCTCATCGATACA--TACATC 51613 Query 243186 AGAT-GAACAAG-AGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCAT 243243 || | |||| | || | | || ||| |||||||||| ||||| || | | | Sbjct 51614 AGCGAGCCCAAGCAACGCACGTACCTCTTCAACGCCATCGACAACATCCCATGCATCCGT 51673 Query 243244 AACAAGGCAAAATGGGCTCAGAAGTGGCT--------AGAACCCGGTAAATCATTTGCTG 243295 || ||||| | ||||| | | ||| | ||||| || | ||||| Sbjct 51674 AAGAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAACTCGA-----CCTTTGCCT 51728 Query 243296 AGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CC 243354 |||||| |||||| | | | || || || | || ||||| ||| ||| || Sbjct 51729 GCCGTCTCATCGCCTTTGCCGCCATCGAGGGCATCTTCTTCTCCGGATCATTC-GCGTCC 51787 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||| || ||| ||| | ||||| |||||| | || |||||| ||||| Sbjct 51788 ATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATC 51847 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC 243474 || ||||||||| | ||| | |||| || ||| || | ||| | ||| Sbjct 51848 TCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAAC 51907 Query 243475 AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 |||| | || | | || || | |||||||| || || |||| | ||| |||| Sbjct 51908 AAGCCATCAAACCAGGTTGTTGAAGACATCATCACCGAGGCCGTTGTCATCGAGCAGGAG 51967 Query 243535 TTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAG 243594 || | ||||| | ||||| ||| | || |||||| | | |||||| | ||| Sbjct 51968 TTTCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAACGCCAAGCTCATGTGCCAG 52027 Query 243595 TACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAAC 243654 |||||||| ||||| |||||||| | || | || || || | |||| |||||| Sbjct 52028 TACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTCGGCAACCAGAAGCACTACAAC 52087 Query 243655 TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTC 243714 ||| |||||||| | |||||||||| ||| || || ||| ||||| ||||||||| Sbjct 52088 GCCACAAACCCCTTCGACTTTATGGAGAACATCTCCCTCGGAGGCAAAACCAACTTCTTC 52147 Query 243715 GAAAAGCGTGTCAGTGATTATCAA 243738 || ||||||||| | || || ||| Sbjct 52148 GAGAAGCGTGTCGGCGACTACCAA 52171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102828098122550