Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20ardabiliae_20[genbank_20GCA_5F000983525.1_202015-04- 30] 3,673 sequences; 34,411,184 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1655 152 5e-32 seq1589 150 2e-31 seq2882 100 3e-16 seq3230 96.9 3e-15 >seq1655 Length=66175 Score = 152 bits (168), Expect = 5e-32 Identities = 497/760 (65%), Gaps = 19/760 (3%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| |||||||||| || ||| ||||| |||| |||||||| ||| ||||| | Sbjct 51419 AACGACGACGAGCGCTTCTTCATCTCTCACGTCCTGGCCTTCTTCGCTGCCTCCGATGGA 51478 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 ||||| || |||||||| ||| | | ||| ||| | | | || | | ||||| | Sbjct 51479 ATCGTCAATGAGAACCTCATTGAGCGCTT-CAGTGGAGAGGTGCAGATCCCCGAGGCCCG 51537 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || ||| ||| | | || ||| | | ||| | |||| ||| || || Sbjct 51538 CTGCTTCTACGGTTTCCAAATCATGATGGAGAACATCCACTCCGAGACATACTCCCTCCT 51597 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACGAGCGCGACACG---CTGCTGAATGCGTTCGA 52321 ||| || | | | || |||| | ||| |||| || | || || |||| Sbjct 51598 CATCGATA--CATACATCAGC-GAGCCCAAGCAACGCACGTACCTCTTCAACGCCATCGA 51654 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 || | || ||| | || || |||||| | ||||| || |||||| | | | Sbjct 51655 CAACATCCCATGCATCCGTAAGAAGGCTGACTGGGCGCTGCGATGGATCTCCGACAAGAA 51714 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | | || | ||| || | | ||||| ||| |||||||| | || || ||||| Sbjct 51715 CTCGACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAGGGCATCTTCTTCTCCGG 51774 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 || || ||||||| | | || | | || | ||||||||||| || ||| Sbjct 51775 ATCATTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGCCTCACCTTCTC 51834 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAA 52561 ||||||| | || || || ||||| || ||||||| ||||| || ||||| | | Sbjct 51835 CAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTGCTGTTCT- 51893 Query 52562 GACGCGCGTGACCGAAAAATTGGATTCGGAC-ACGATCCTGAG--CATGTTCAAGGAGGC 52618 | | | | | | | || | || || | | | ||| ||| ||| ||||| Sbjct 51894 --CCCACCTCAACAACAA---GCCATCAAACCAGGTTGTTGAAGACATCATCACCGAGGC 51948 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || | ||||| |||||||| | || | ||| || || | ||| || || ||||| Sbjct 51949 CGTTGTCATCGAGCAGGAGTTTCTCACAGACGCCCTCCCATGTGCGCTCCTCGGAATGAA 52008 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 ||| || ||||||| ||||||||||||| || || || ||||| | || ||| | Sbjct 52009 CGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCCTGGCACTC-G 52067 Query 52739 GCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 ||| ||| ||| ||| |||||| || || || || |||||| | ||||| || || | Sbjct 52068 GCAACCAGAAGCACTACAACGCCACAAACCCCTTCGACTTTATGGAGAACATCTCCCTCG 52127 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| |||||||| ||||||||||| |||||||| || Sbjct 52128 GAGGCAAAACCAACTTCTTCGAGAAGCGTGTCGGCGACTA 52167 >seq1589 Length=144912 Score = 150 bits (166), Expect = 2e-31 Identities = 568/873 (65%), Gaps = 21/873 (2%) Strand=Plus/Minus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTC 153655 ||| | ||| || || || || ||||| ||| || | | |||||| | |||||| Sbjct 47461 GGCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTC 47402 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 || |||||||||| || ||| ||||| || | ||| ||||| |||| ||| Sbjct 47401 GGTGCAGAGGTTGGAGCTGCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTGCCGTTGGC 47342 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCT 153775 ||||| ||| |||| ||||| || |||||||||| || | |||| ||| | | Sbjct 47341 AGCGTCCTTGTAGAGGATGTATGGCGTGCCGGTCTCGGTCTGAGCCTCGAGGATGG-CGT 47283 Query 153776 ATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834 | || | ||| || || || || ||| |||||| | |||||||||||||| Sbjct 47282 ACCAGAGCTTCTGAGCGCGGACTGTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGT 47223 Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894 |||| ||| ||||| |||||||| || || || ||||| |||| || || |||| Sbjct 47222 ACAGCTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACA 47163 Query 153895 TCAGCGACCACAT-ATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 ||| | ||| | | || || | || || |||||||||||| ||||||||||| Sbjct 47162 TCAAAGTCCAAGTGGTGTTCTGC-TCAACACGCTTCATGAACAGATCAGGCACCCAGAGA 47104 Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGC--GCCCATGTTGCGTTTC--AGATT 154009 |||| | | ||||| || | | ||||| | || || | | || | |||| Sbjct 47103 CCGTAGAACAAATCGCGGGC---ACGAACCTCCTCCTTTCCGTGGTTC-TTGCGGAGATC 47048 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 | | | ||| || |||||||| || || ||||| | ||| | ||||| || Sbjct 47047 CAAGAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCGAAAGCACCAGGTCG 46988 Query 154070 C---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 | || |||||||| ||||||| ||| | | ||||| || || |||| ||||||| | Sbjct 46987 CTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTAC 46928 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCT-TGCTGCCGCGGGCGCGCACTTGAT 154185 || ||| | | || ||||| || |||| | |||| || ||||| | | | Sbjct 46927 GAGACCGTTGGATGTTCCGTTTGTACCGCTGATGTATGCT-CCAGTCGCGCGGATGCGGT 46869 Query 154186 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTC 154244 | ||||| | || |||||||| ||| ||| || || ||||| ||| | || || Sbjct 46868 GAACGTTGAGTCCGATGCCGCCAGCGTTCTTGGAGATCATGGCGCAGGTCTTCAAG-GTG 46810 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||||||||| || ||||| || || | | ||| | ||| || || || || Sbjct 46809 TCGTAGATGCCATCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGA 46750 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGCT 154363 | || | ||||| || || || || || || || || || | || || | Sbjct 46749 GCGTTGGGTGTTCCGGCGCTGAACAGCGTAGGCGAAGCATGTGTGAAGTACTTGTTCG-A 46691 Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423 ||| | ||| || || ||||| || || ||||| ||||| ||||| | || || Sbjct 46690 CATGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCATCACCGTGGATGCCAACAGCAAC 46631 Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 ||||||| ||| || || || | ||||| || Sbjct 46630 ACGCATGATCATCTGTTGTGGTCTCTCGGCAAC 46598 >seq2882 Length=147932 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| |||||||||||||||| || || ||||||||||| || |||| ||| Sbjct 6586 CCTTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGA 6645 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | | |||||||||||||| || || || || || || ||| || || | | | Sbjct 6646 TCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGT 6705 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | |||||||| |||||||||||||| || | || || || || || || || || | Sbjct 6706 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 6765 Query 138605 AAATCTGCATGGCTT 138619 || | | |||| ||| Sbjct 6766 AACTGT-CATGACTT 6779 >seq3230 Length=199858 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | || || ||| |||||||| || |||| Sbjct 170522 GATTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCG 170463 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | |||||||||||||| || || || || ||||| ||| || || | | Sbjct 170462 AAGATCAATCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTAACA 170403 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||| | |||||||||||| | || | ||| || || || || || || Sbjct 170402 TTGT-CGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTT 170344 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 170343 GACGAAGATCTGCAT 170329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || ||| ||||| || || || |||| Sbjct 170294 GACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCCTCAAGCTGCTTTCCGGCG 170235 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT--TGTTTTA 138538 |||| || ||||| ||||| ||||| || || || ||||| ||| | || | || Sbjct 170234 AAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTC-TTGAATCTTGCTCTTCAC 170176 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||| || | ||| || | ||||| ||||| | ||| | || || ||||||| Sbjct 170175 ATTG-TCGATGGTATCCGAGGACTCGACCTCAAGCGTGATGGTCTTTCCAGTCA 170123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239615352560